Gene annotation
Transcriptome id Sobic.001G338700.1
Synonym NF-YB3, Nuclear Factor Y, Sb01g032590, SbNF-YB1
Functional annotation tentative name (PubMedID : 31536532)
histone-like transcription factor and archaeal histone, putative, expressed
UniProt C5WWL6
Pfam PF00808
Panther DB PTHR11064 PTHR11064:SF45
NCBI CDD KOG0869; CCAAT-binding factor, subunit A (HAP3)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14540 : nuclear factor Y, subunit B3
RAP-DB (Rice) LOC_Os03g29970.1 : histone-like transcription factor and archaeal histone, putative, expressed
MaizeGDB (Corn) Zm00025a048711 , Zm00025a030028 , Zm00025a043921 , Zm00025a015157 , Zm00025a002857
Brachypodium KQK10455 , KQK15318 , KQJ95195 , PNT71091 , KQK05856 , KQK21295 , KQK10456
Barley HORVU1Hr1G090450.11 , HORVU1Hr1G090450.10 , HORVU1Hr1G090450.12 , HORVU1Hr1G071620.7 , HORVU1Hr1G071620.6 , HORVU1Hr1G071620.5 , HORVU1Hr1G071620.4 , HORVU1Hr1G071620.3 , HORVU1Hr1G071620.2 , HORVU1Hr1G071620.1 , HORVU1Hr1G071620.8 , HORVU1Hr1G071620.22 , HORVU1Hr1G071620.23 , HORVU1Hr1G071620.20 , HORVU1Hr1G071620.21 , HORVU7Hr1G105500.5 , HORVU7Hr1G105500.8 , HORVU7Hr1G105500.7 , HORVU7Hr1G105500.9 , HORVU3Hr1G087390.12 , HORVU7Hr1G105500.1 , HORVU3Hr1G087390.2 , HORVU7Hr1G105500.3 , HORVU3Hr1G087390.14 , HORVU7Hr1G105500.4 , HORVU7Hr1G105500.6 , HORVU5Hr1G004870.2 , HORVU5Hr1G004870.3 , HORVU7Hr1G105460.1 , HORVU5Hr1G004870.1 , HORVU5Hr1G004870.5 , HORVU1Hr1G071620.9 , HORVU2Hr1G032320.4 , HORVU3Hr1G087390.13 , HORVU3Hr1G087390.10 , HORVU3Hr1G087390.11 , HORVU2Hr1G032320.1 , HORVU2Hr1G032320.2 , HORVU2Hr1G032320.3 , HORVU3Hr1G047250.1 , HORVU3Hr1G047250.2 , HORVU3Hr1G087390.8 , HORVU3Hr1G087390.9 , HORVU3Hr1G087390.1 , HORVU7Hr1G105500.2 , HORVU3Hr1G087390.3 , HORVU3Hr1G087390.4 , HORVU3Hr1G087390.5 , HORVU3Hr1G087390.6 , HORVU3Hr1G087390.7 , HORVU1Hr1G071620.19 , HORVU1Hr1G071620.18 , HORVU1Hr1G071620.16 , HORVU1Hr1G071620.14 , HORVU1Hr1G071620.13 , HORVU1Hr1G071620.12 , HORVU1Hr1G071620.11 , HORVU2Hr1G087460.1 , HORVU5Hr1G004870.6 , HORVU5Hr1G004870.7 , HORVU1Hr1G090450.9 , HORVU1Hr1G090450.8 , HORVU5Hr1G004870.4 , HORVU1Hr1G090450.1 , HORVU1Hr1G090450.3 , HORVU1Hr1G090450.2 , HORVU1Hr1G090450.5 , HORVU1Hr1G090450.4 , HORVU1Hr1G090450.7 , HORVU1Hr1G090450.6
Wheat TraesCS1D02G287500 , TraesCS1D02G287500 , TraesCS1B02G297900 , TraesCS1B02G297900 , TraesCS3B02G385600 , TraesCS1D02G419500 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G411700 , TraesCS1B02G442000 , TraesCS1D02G419500 , TraesCS1B02G297900 , TraesCS3D02G347000 , TraesCS3A02G352900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
2 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G109500 expressed protein -
4 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
5 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
6 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
7 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
8 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
9 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
10 Sobic.001G198800 -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
11 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
12 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
13 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
14 Sobic.002G000500 isoflavone reductase, putative, expressed -
15 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -
16 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
18 Sobic.002G033800 expressed protein -
19 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
20 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -


Gene co-expression network
sample Sobic001G338700 Sobic001G338700 Sobic003G052500 Sobic003G052500 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic010G109500 Sobic010G109500 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic004G056900 Sobic004G056900 Sobic001G338700--Sobic004G056900 Sobic007G071500 Sobic007G071500 Sobic001G338700--Sobic007G071500 Sobic001G070500 Sobic001G070500 Sobic001G338700--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic001G338700--Sobic003G209800 Sobic004G035500 Sobic004G035500 Sobic001G338700--Sobic004G035500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic003G052500--Sobic001G338700 Sobic006G011100--Sobic010G109500 Sobic002G000500 Sobic002G000500 Sobic006G011100--Sobic002G000500 Sobic001G274600 Sobic001G274600 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G011100--Sobic006G234100 Sobic006G011100--Sobic003G052500 Sobic002G339200 Sobic002G339200 Sobic006G011100--Sobic002G339200 Sobic001G448400 Sobic001G448400 Sobic006G011100--Sobic001G448400 Sobic002G040100 Sobic002G040100 Sobic006G011100--Sobic002G040100 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic002G242000 Sobic002G242000 Sobic004G056900--Sobic002G242000 Sobic001G177000 Sobic001G177000 Sobic004G056900--Sobic001G177000 Sobic001G046900 Sobic001G046900 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic007G136900 Sobic007G136900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic009G143100 Sobic009G143100 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic008G134800 Sobic008G134800 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic007G071500--Sobic003G052500 Sobic007G071500--Sobic001G177000 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic001G070500--Sobic010G189300 Sobic009G229700 Sobic009G229700 Sobic001G070500--Sobic009G229700 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500 Sobic003G359100 Sobic003G359100 Sobic004G035500--Sobic003G359100 Sobic004G035500--Sobic008G134800 Sobic004G035500--Sobic007G071500 Sobic004G035500--Sobic004G249800 Sobic008G066100 Sobic008G066100 Sobic004G035500--Sobic008G066100 Sobic008G021300 Sobic008G021300 Sobic004G035500--Sobic008G021300 Sobic007G207800 Sobic007G207800 Sobic004G035500--Sobic007G207800 Sobic004G272100 Sobic004G272100 Sobic004G035500--Sobic004G272100 Sobic004G035500--Sobic006G105900
Octagon: transcription factors


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