Gene annotation
Transcriptome id Sobic.002G040100.1
Synonym Sb02g003436
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
-
UniProt C5XA74
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g06700.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G000500 isoflavone reductase, putative, expressed -
2 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
3 Sobic.003G199800 expressed protein -
4 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
5 Sobic.001G068400 - -
6 Sobic.010G109500 expressed protein -
7 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.010G183032 - -
9 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G035700 - -
12 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
14 Sobic.010G108401 - -
15 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
16 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
17 Sobic.009G243500 polygalacturonase, putative, expressed -
18 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
19 Sobic.007G171600 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
20 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -


Gene co-expression network
sample Sobic002G040100 Sobic002G040100 Sobic002G000500 Sobic002G000500 Sobic002G040100--Sobic002G000500 Sobic008G038300 Sobic008G038300 Sobic002G040100--Sobic008G038300 Sobic003G199800 Sobic003G199800 Sobic002G040100--Sobic003G199800 Sobic010G276400 Sobic010G276400 Sobic002G040100--Sobic010G276400 Sobic001G068400 Sobic001G068400 Sobic002G040100--Sobic001G068400 Sobic010G109500 Sobic010G109500 Sobic002G040100--Sobic010G109500 Sobic010G038500 Sobic010G038500 Sobic002G040100--Sobic010G038500 Sobic010G183032 Sobic010G183032 Sobic002G040100--Sobic010G183032 Sobic003G209800 Sobic003G209800 Sobic002G040100--Sobic003G209800 Sobic002G000500--Sobic002G040100 Sobic006G011100 Sobic006G011100 Sobic002G000500--Sobic006G011100 Sobic002G000500--Sobic010G109500 Sobic002G000500--Sobic010G276400 Sobic002G000500--Sobic003G199800 Sobic002G000500--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic002G000500--Sobic007G171600 Sobic002G000500--Sobic003G209800 Sobic001G274600 Sobic001G274600 Sobic002G000500--Sobic001G274600 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic010G108401 Sobic010G108401 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic004G071800 Sobic004G071800 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800 Sobic003G199800--Sobic002G040100 Sobic003G199800--Sobic010G276400 Sobic003G199800--Sobic002G000500 Sobic010G183100 Sobic010G183100 Sobic003G199800--Sobic010G183100 Sobic004G035500 Sobic004G035500 Sobic003G199800--Sobic004G035500 Sobic003G199800--Sobic008G038300 Sobic003G199800--Sobic010G109500 Sobic007G189700 Sobic007G189700 Sobic003G199800--Sobic007G189700 Sobic003G199800--Sobic009G191300 Sobic010G276400--Sobic010G109500 Sobic010G276400--Sobic003G199800 Sobic010G276400--Sobic002G000500 Sobic010G276400--Sobic002G040100 Sobic006G234100 Sobic006G234100 Sobic010G276400--Sobic006G234100 Sobic010G276400--Sobic001G068400 Sobic010G276400--Sobic008G038300 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic001G068400--Sobic002G040100 Sobic001G068400--Sobic010G038500 Sobic001G068400--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic001G068400--Sobic004G035700 Sobic008G081200 Sobic008G081200 Sobic001G068400--Sobic008G081200 Sobic001G068400--Sobic010G276400 Sobic001G068400--Sobic002G000500 Sobic001G068400--Sobic003G199800 Sobic001G068400--Sobic010G183032 Sobic010G109500--Sobic006G234100 Sobic001G448400 Sobic001G448400 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G109500--Sobic010G276400 Sobic002G339200 Sobic002G339200 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic003G052500 Sobic003G052500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic010G038500--Sobic008G081200 Sobic009G254600 Sobic009G254600 Sobic010G038500--Sobic009G254600 Sobic010G038500--Sobic001G068400 Sobic010G038500--Sobic002G040100 Sobic010G038500--Sobic004G035700 Sobic010G038500--Sobic010G183100 Sobic002G233300 Sobic002G233300 Sobic010G038500--Sobic002G233300 Sobic010G038500--Sobic003G199800 Sobic003G131000 Sobic003G131000 Sobic010G038500--Sobic003G131000 Sobic010G183032--Sobic010G108401 Sobic010G183032--Sobic008G038300 Sobic010G183032--Sobic004G035700 Sobic010G183032--Sobic001G274600 Sobic010G183032--Sobic002G040100 Sobic001G297400 Sobic001G297400 Sobic010G183032--Sobic001G297400 Sobic010G183032--Sobic001G068400 Sobic010G183032--Sobic010G183100 Sobic010G183032--Sobic002G000500 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500
Octagon: transcription factors


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