Gene annotation
Transcriptome id Sobic.003G209800.1
Synonym LHCB1.5, Sb03g027030, LHB1B2
Functional annotation Chorophyll a/b binding protein 2 (PubMedID : 26186930)
Protein chlorophyll a-b binding protein 2 (Os) (PubMedID : 27208977)
chlorophyll A-B binding protein, putative, expressed
UniProt A0A1W0VYB5
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology K08912; light-harvesting complex II chlorophyll a/b binding protein 1
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34420 : photosystem II light harvesting complex gene B1B2
RAP-DB (Rice) LOC_Os01g41710.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a014904 , Zm00025a038456 , Zm00025a036624 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624
Brachypodium KQK13732 , KQJ91372 , KQK15547 , KQK04837 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU7Hr1G040380.8 , HORVU7Hr1G040380.9 , HORVU7Hr1G040380.6 , HORVU7Hr1G040380.7 , HORVU7Hr1G040380.4 , HORVU7Hr1G040380.5 , HORVU7Hr1G040380.2 , HORVU7Hr1G040380.3 , HORVU7Hr1G040380.1 , HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU7Hr1G058120.1 , HORVU6Hr1G033160.17 , HORVU6Hr1G033160.16 , HORVU6Hr1G033160.11 , HORVU6Hr1G033160.10 , HORVU6Hr1G033160.13 , HORVU6Hr1G033160.12 , HORVU6Hr1G033160.19 , HORVU6Hr1G033160.18 , HORVU1Hr1G088870.2 , HORVU1Hr1G088870.1 , HORVU6Hr1G033160.15 , HORVU7Hr1G040370.2 , HORVU7Hr1G040370.1 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1 , HORVU1Hr1G078380.2 , HORVU1Hr1G078380.1 , HORVU2Hr1G040780.8 , HORVU2Hr1G040780.7 , HORVU2Hr1G040780.6 , HORVU2Hr1G040780.5 , HORVU2Hr1G040780.4 , HORVU2Hr1G040780.3 , HORVU2Hr1G040780.2 , HORVU2Hr1G040780.1 , HORVU7Hr1G040380.10 , HORVU7Hr1G040380.11 , HORVU6Hr1G016890.3 , HORVU6Hr1G016890.5 , HORVU6Hr1G016890.6 , HORVU6Hr1G033160.1 , HORVU7Hr1G058120.2 , HORVU6Hr1G033160.3 , HORVU6Hr1G033160.2 , HORVU6Hr1G033160.5 , HORVU6Hr1G033160.4 , HORVU6Hr1G033160.7 , HORVU6Hr1G033160.6 , HORVU6Hr1G033160.9 , HORVU6Hr1G033160.8
Wheat TraesCS5D02G329200 , TraesCS5A02G322500 , TraesCS2A02G204800 , TraesCS5B02G462900 , TraesCS5B02G322900 , TraesCS1D02G428200 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS1B02G317500
Populus -


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cDNA sequences
Sobic.003G209800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
2 Sobic.010G109500 expressed protein -
3 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
6 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
7 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
8 Sobic.004G071800 - -
9 Sobic.002G000500 isoflavone reductase, putative, expressed -
10 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
11 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
12 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
13 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
14 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
15 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
16 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
17 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
18 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
19 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
20 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family


Gene co-expression network
sample Sobic003G209800 Sobic003G209800 Sobic003G052500 Sobic003G052500 Sobic003G209800--Sobic003G052500 Sobic010G109500 Sobic010G109500 Sobic003G209800--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic003G209800--Sobic001G274600 Sobic006G011100 Sobic006G011100 Sobic003G209800--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic003G209800--Sobic008G038300 Sobic006G234100 Sobic006G234100 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic002G000500 Sobic002G000500 Sobic003G209800--Sobic002G000500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic010G109500--Sobic006G234100 Sobic001G448400 Sobic001G448400 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic002G339200 Sobic002G339200 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic001G274600--Sobic003G209800 Sobic001G274600--Sobic006G011100 Sobic001G274600--Sobic003G052500 Sobic010G183032 Sobic010G183032 Sobic001G274600--Sobic010G183032 Sobic001G274600--Sobic002G000500 Sobic010G108401 Sobic010G108401 Sobic001G274600--Sobic010G108401 Sobic001G274600--Sobic006G073500 Sobic006G011100--Sobic010G109500 Sobic006G011100--Sobic002G000500 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G011100--Sobic006G234100 Sobic006G011100--Sobic003G052500 Sobic006G011100--Sobic002G339200 Sobic006G011100--Sobic001G448400 Sobic002G040100 Sobic002G040100 Sobic006G011100--Sobic002G040100 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic008G038300--Sobic004G071800 Sobic003G199800 Sobic003G199800 Sobic008G038300--Sobic003G199800 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic006G105900--Sobic001G078000 Sobic006G105900--Sobic004G235200 Sobic005G042000 Sobic005G042000 Sobic006G105900--Sobic005G042000 Sobic007G071500 Sobic007G071500 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic004G249800 Sobic004G249800 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900 Sobic004G071800--Sobic001G274600 Sobic004G071800--Sobic003G209800 Sobic004G272600 Sobic004G272600 Sobic004G071800--Sobic004G272600 Sobic004G071800--Sobic003G052500 Sobic004G071800--Sobic008G038300 Sobic004G071800--Sobic006G073500 Sobic002G064000 Sobic002G064000 Sobic004G071800--Sobic002G064000 Sobic004G071800--Sobic002G033900 Sobic004G071800--Sobic001G070500 Sobic002G000500--Sobic002G040100 Sobic002G000500--Sobic006G011100 Sobic002G000500--Sobic010G109500 Sobic002G000500--Sobic010G276400 Sobic002G000500--Sobic003G199800 Sobic002G000500--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic002G000500--Sobic007G171600 Sobic002G000500--Sobic003G209800 Sobic002G000500--Sobic001G274600
Octagon: transcription factors


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