Gene annotation
Transcriptome id Sobic.002G339200.2
Synonym LHCB3*1, Sb02g036380, LHCB3,LHCB3
Functional annotation Chorophyll a/b binding protein (PubMedID : 26186930)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Light harvesting complex-II subunit B3 (PubMedID : 29017446)
chlorophyll A-B binding protein, putative, expressed
UniProt A0A1W0W709
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF11
NCBI CDD -
KEGG Orthology K08914; light-harvesting complex II chlorophyll a/b binding protein 3
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT5G54270 : light-harvesting chlorophyll B-binding protein 3
RAP-DB (Rice) LOC_Os07g37550.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a038213 , Zm00025a014904 , Zm00025a038456 , Zm00025a036624 , Zm00025a054950 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624 , Zm00025a034789 , Zm00025a019095
Brachypodium KQK14298 , KQK15763 , KQK13732 , KQJ91372 , KQJ90397 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109260.2 , HORVU5Hr1G124160.1 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1 , HORVU2Hr1G040780.8 , HORVU2Hr1G040780.7 , HORVU2Hr1G040780.6 , HORVU2Hr1G040780.5 , HORVU2Hr1G040780.4 , HORVU2Hr1G040780.3 , HORVU2Hr1G040780.2 , HORVU2Hr1G040780.1 , HORVU5Hr1G062240.1 , HORVU5Hr1G062240.3 , HORVU5Hr1G062240.2 , HORVU5Hr1G062240.5 , HORVU5Hr1G062240.4
Wheat TraesCS5D02G329200 , TraesCS5A02G213000 , TraesCS5A02G322500 , TraesCS2A02G204800 , TraesCS6B02G191500 , TraesCS5B02G462900 , TraesCS2B02G220100 , TraesCS2A02G187200 , TraesCS5B02G322900 , TraesCS1D02G428200 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS5B02G210800 , TraesCS5B02G210800 , TraesCS6D02G152700 , TraesCS1B02G451100 , TraesCS6A02G159800 , TraesCS1B02G317500
Populus PNT13151 , PNT13149 , PNT13148 , PNT13147 , PNT13146 , PNT13145 , PNT13150


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cDNA sequences
Sobic.002G339200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
2 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
3 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
4 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
5 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
6 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
7 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
8 Sobic.010G109500 expressed protein -
9 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
12 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
13 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
14 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
15 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
16 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
18 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
19 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
20 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2


Gene co-expression network
sample Sobic002G339200 Sobic002G339200 Sobic002G329600 Sobic002G329600 Sobic002G339200--Sobic002G329600 Sobic006G264201 Sobic006G264201 Sobic002G339200--Sobic006G264201 Sobic001G078000 Sobic001G078000 Sobic002G339200--Sobic001G078000 Sobic006G234100 Sobic006G234100 Sobic002G339200--Sobic006G234100 Sobic009G234600 Sobic009G234600 Sobic002G339200--Sobic009G234600 Sobic010G241000 Sobic010G241000 Sobic002G339200--Sobic010G241000 Sobic001G448400 Sobic001G448400 Sobic002G339200--Sobic001G448400 Sobic010G109500 Sobic010G109500 Sobic002G339200--Sobic010G109500 Sobic007G029300 Sobic007G029300 Sobic002G339200--Sobic007G029300 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G030200 Sobic002G030200 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800 Sobic001G078000--Sobic002G329600 Sobic006G105900 Sobic006G105900 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G234100--Sobic003G052500 Sobic006G234100--Sobic002G329600 Sobic006G234100--Sobic001G078000 Sobic006G234100--Sobic006G264201 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic009G234600--Sobic001G177000 Sobic009G234600--Sobic002G339200 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic001G046900 Sobic001G046900 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400
Octagon: transcription factors


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