Gene annotation
Transcriptome id Sobic.004G343300.1
Synonym Sb04g037040
Functional annotation - (PubMedID : 26465154)
unknown (PubMedID : 29017446)
expressed protein
UniProt C5XVU8
Pfam -
Panther DB PTHR36802 PTHR36802:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37360 : -
RAP-DB (Rice) LOC_Os02g57030.1 : expressed protein
MaizeGDB (Corn) Zm00025a022589
Brachypodium KQK01331 , KQK01332
Barley HORVU6Hr1G090250.12 , HORVU6Hr1G090250.13 , HORVU6Hr1G090250.11 , HORVU6Hr1G090250.14 , HORVU6Hr1G090250.15 , HORVU6Hr1G090250.1 , HORVU6Hr1G090250.2 , HORVU6Hr1G090250.3 , HORVU6Hr1G090250.4 , HORVU6Hr1G090250.5 , HORVU6Hr1G090250.6 , HORVU6Hr1G090250.7
Wheat -
Populus -


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cDNA sequences
Sobic.004G343300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G249800 expressed protein -
2 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
3 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
4 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
5 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
6 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
7 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
8 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
9 Sobic.002G033800 expressed protein -
10 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
11 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
12 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
13 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
14 Sobic.010G109500 expressed protein -
15 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
16 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
17 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
18 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
19 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain


Gene co-expression network
sample Sobic004G343300 Sobic004G343300 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic001G448400 Sobic001G448400 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic004G249800--Sobic006G234100 Sobic004G035500 Sobic004G035500 Sobic004G249800--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic004G249800--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic004G249800--Sobic008G134800 Sobic004G249800--Sobic003G132100 Sobic005G042000 Sobic005G042000 Sobic004G249800--Sobic005G042000 Sobic003G132100--Sobic004G343300 Sobic008G051000 Sobic008G051000 Sobic003G132100--Sobic008G051000 Sobic003G197400 Sobic003G197400 Sobic003G132100--Sobic003G197400 Sobic006G264201 Sobic006G264201 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G433900 Sobic003G433900 Sobic003G132100--Sobic003G433900 Sobic003G132100--Sobic004G249800 Sobic003G132100--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic003G132100--Sobic009G091800 Sobic001G078000 Sobic001G078000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic006G105900--Sobic005G042000 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic006G105900--Sobic004G249800 Sobic003G052500 Sobic003G052500 Sobic006G105900--Sobic003G052500 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic009G143100 Sobic009G143100 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic009G234600 Sobic009G234600 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic006G234100--Sobic002G329600 Sobic006G234100--Sobic001G078000 Sobic006G234100--Sobic006G264201 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic009G030900 Sobic009G030900 Sobic004G175500--Sobic009G030900 Sobic002G033800--Sobic004G343300 Sobic002G033800--Sobic003G132100 Sobic004G023200 Sobic004G023200 Sobic002G033800--Sobic004G023200 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic002G033800--Sobic006G103400 Sobic002G033800--Sobic004G175500 Sobic002G033800--Sobic001G448400 Sobic002G033800--Sobic001G029100
Octagon: transcription factors


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