Gene annotation
Transcriptome id Sobic.006G103400.1
Synonym Sb06g018690
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Y9R3
Pfam -
Panther DB PTHR15852 PTHR15852:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75690 : DnaJ/Hsp40 cysteine-rich domain superfamily protein
RAP-DB (Rice) LOC_Os03g14040.2 : expressed protein
MaizeGDB (Corn) Zm00025a011144
Brachypodium KQK22552 , KQK22551 , KQK22550 , PNT77722
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
2 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
3 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
4 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
5 Sobic.002G033800 expressed protein -
6 Sobic.004G249800 expressed protein -
7 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
8 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
9 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
10 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
11 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
12 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
13 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
14 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
15 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
16 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
17 Sobic.006G222700 OsCHL Chloroplastic lipocalin, expressed -
18 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
19 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
20 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin


Gene co-expression network
sample Sobic006G103400 Sobic006G103400 Sobic004G343300 Sobic004G343300 Sobic006G103400--Sobic004G343300 Sobic004G023200 Sobic004G023200 Sobic006G103400--Sobic004G023200 Sobic004G175500 Sobic004G175500 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic002G033800 Sobic002G033800 Sobic006G103400--Sobic002G033800 Sobic004G249800 Sobic004G249800 Sobic006G103400--Sobic004G249800 Sobic001G041800 Sobic001G041800 Sobic006G103400--Sobic001G041800 Sobic010G241000 Sobic010G241000 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic001G448400 Sobic001G448400 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic004G023200--Sobic002G033800 Sobic004G023200--Sobic004G343300 Sobic004G023200--Sobic006G103400 Sobic004G023200--Sobic001G448400 Sobic004G023200--Sobic004G249800 Sobic004G023200--Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic004G023200--Sobic010G109500 Sobic004G023200--Sobic003G132100 Sobic004G035500 Sobic004G035500 Sobic004G023200--Sobic004G035500 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic004G175500--Sobic006G103400 Sobic009G030900 Sobic009G030900 Sobic004G175500--Sobic009G030900 Sobic003G197400--Sobic001G041800 Sobic003G197400--Sobic003G132100 Sobic003G197400--Sobic004G343300 Sobic006G222700 Sobic006G222700 Sobic003G197400--Sobic006G222700 Sobic003G197400--Sobic006G103400 Sobic007G029300 Sobic007G029300 Sobic003G197400--Sobic007G029300 Sobic003G197400--Sobic004G175500 Sobic003G197400--Sobic001G448400 Sobic003G197400--Sobic002G033800 Sobic002G033800--Sobic004G343300 Sobic002G033800--Sobic003G132100 Sobic002G033800--Sobic004G023200 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic002G033800--Sobic006G103400 Sobic002G033800--Sobic004G175500 Sobic002G033800--Sobic001G448400 Sobic002G033800--Sobic001G029100 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic004G249800--Sobic006G234100 Sobic004G249800--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic004G249800--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic004G249800--Sobic008G134800 Sobic004G249800--Sobic003G132100 Sobic005G042000 Sobic005G042000 Sobic004G249800--Sobic005G042000 Sobic001G041800--Sobic003G197400 Sobic001G041800--Sobic004G175500 Sobic001G041800--Sobic006G222700 Sobic001G041800--Sobic003G132100 Sobic001G041800--Sobic006G103400 Sobic001G041800--Sobic004G343300 Sobic001G041800--Sobic002G198600 Sobic001G415400 Sobic001G415400 Sobic001G041800--Sobic001G415400 Sobic004G068300 Sobic004G068300 Sobic001G041800--Sobic004G068300 Sobic009G234600 Sobic009G234600 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic003G052500 Sobic003G052500 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic004G235200--Sobic006G105900 Sobic005G087000 Sobic005G087000 Sobic004G235200--Sobic005G087000 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic002G033900 Sobic002G033900 Sobic004G235200--Sobic002G033900 Sobic010G189300 Sobic010G189300 Sobic004G235200--Sobic010G189300 Sobic004G235200--Sobic003G052500
Octagon: transcription factors


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