Gene annotation
Transcriptome id Sobic.001G536800.3,Sobic.001G536800.1,Sobic.001G536800.2
Synonym Sb01g049960
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5WMP1
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF286
NCBI CDD KOG0865; Cyclophilin type peptidyl-prolyl cis-trans isomerase KOG0880Peptidyl-prolyl cis-trans isomerase
KEGG Orthology K03768; PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT5G35100 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os08g19610.1,LOC_Os08g19610.3,LOC_Os08g19610.2 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a000165
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G536800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
2 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
4 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G098800 peroxiredoxin, putative, expressed -
6 Sobic.009G125400 FZL, putative, expressed -
7 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
8 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
9 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
10 Sobic.006G010900 expressed protein -
11 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
12 Sobic.001G233400 Citrate transporter protein, putative, expressed -
13 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
14 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
15 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
16 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
17 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
19 Sobic.002G033800 expressed protein -
20 Sobic.002G385700 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase


Gene co-expression network
sample Sobic001G536800 Sobic001G536800 Sobic001G069000 Sobic001G069000 Sobic001G536800--Sobic001G069000 Sobic009G085500 Sobic009G085500 Sobic001G536800--Sobic009G085500 Sobic003G137100 Sobic003G137100 Sobic001G536800--Sobic003G137100 Sobic006G103400 Sobic006G103400 Sobic001G536800--Sobic006G103400 Sobic002G098800 Sobic002G098800 Sobic001G536800--Sobic002G098800 Sobic009G125400 Sobic009G125400 Sobic001G536800--Sobic009G125400 Sobic008G066100 Sobic008G066100 Sobic001G536800--Sobic008G066100 Sobic004G308700 Sobic004G308700 Sobic001G536800--Sobic004G308700 Sobic001G041800 Sobic001G041800 Sobic001G536800--Sobic001G041800 Sobic003G412900 Sobic003G412900 Sobic001G069000--Sobic003G412900 Sobic001G069000--Sobic009G125400 Sobic001G069000--Sobic002G098800 Sobic006G010900 Sobic006G010900 Sobic001G069000--Sobic006G010900 Sobic001G069000--Sobic001G536800 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic009G085500--Sobic001G536800 Sobic009G085500--Sobic003G137100 Sobic009G085500--Sobic008G066100 Sobic009G085500--Sobic001G069000 Sobic009G085500--Sobic002G098800 Sobic009G085500--Sobic006G103400 Sobic009G085500--Sobic006G010900 Sobic009G085500--Sobic003G412900 Sobic002G036000 Sobic002G036000 Sobic009G085500--Sobic002G036000 Sobic003G137100--Sobic001G536800 Sobic003G137100--Sobic009G085500 Sobic003G137100--Sobic001G069000 Sobic001G495300 Sobic001G495300 Sobic003G137100--Sobic001G495300 Sobic003G137100--Sobic006G010900 Sobic003G137100--Sobic003G412900 Sobic001G233400 Sobic001G233400 Sobic003G137100--Sobic001G233400 Sobic002G000700 Sobic002G000700 Sobic003G137100--Sobic002G000700 Sobic003G137100--Sobic006G103400 Sobic004G343300 Sobic004G343300 Sobic006G103400--Sobic004G343300 Sobic004G023200 Sobic004G023200 Sobic006G103400--Sobic004G023200 Sobic004G175500 Sobic004G175500 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic002G033800 Sobic002G033800 Sobic006G103400--Sobic002G033800 Sobic004G249800 Sobic004G249800 Sobic006G103400--Sobic004G249800 Sobic006G103400--Sobic001G041800 Sobic010G241000 Sobic010G241000 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic002G098800--Sobic001G069000 Sobic002G098800--Sobic004G308700 Sobic008G021300 Sobic008G021300 Sobic002G098800--Sobic008G021300 Sobic002G098800--Sobic004G272100 Sobic002G098800--Sobic008G066100 Sobic004G035500 Sobic004G035500 Sobic002G098800--Sobic004G035500 Sobic010G201700 Sobic010G201700 Sobic002G098800--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic002G098800--Sobic003G303700 Sobic004G274100 Sobic004G274100 Sobic002G098800--Sobic004G274100 Sobic009G125400--Sobic001G069000 Sobic009G125400--Sobic004G308700 Sobic009G125400--Sobic004G272100 Sobic007G004800 Sobic007G004800 Sobic009G125400--Sobic007G004800 Sobic009G125400--Sobic008G021300 Sobic007G009200 Sobic007G009200 Sobic009G125400--Sobic007G009200 Sobic001G102800 Sobic001G102800 Sobic009G125400--Sobic001G102800 Sobic009G125400--Sobic010G201700 Sobic006G272900 Sobic006G272900 Sobic009G125400--Sobic006G272900 Sobic001G425400 Sobic001G425400 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic004G308700--Sobic001G102800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic001G041800--Sobic003G197400 Sobic001G041800--Sobic004G175500 Sobic006G222700 Sobic006G222700 Sobic001G041800--Sobic006G222700 Sobic003G132100 Sobic003G132100 Sobic001G041800--Sobic003G132100 Sobic001G041800--Sobic006G103400 Sobic001G041800--Sobic004G343300 Sobic002G198600 Sobic002G198600 Sobic001G041800--Sobic002G198600 Sobic001G415400 Sobic001G415400 Sobic001G041800--Sobic001G415400 Sobic004G068300 Sobic004G068300 Sobic001G041800--Sobic004G068300
Octagon: transcription factors


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