Gene annotation
| Transcriptome id | Sobic.002G385700.2,Sobic.002G385700.1 |
|---|---|
| Synonym | Sb02g040190, MDH |
| Functional annotation | lactate/malate dehydrogenase, putative, expressed |
| UniProt | C5X371 |
| Pfam | PF00056 PF02866 |
| Panther DB | PTHR11540:SF25 PTHR11540 |
| NCBI CDD | - |
| KEGG Orthology | K00026; malate dehydrogenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Orthologs (automatic annotation)
| TAIR | AT3G47520 : malate dehydrogenase |
|---|---|
| RAP-DB (Rice) | LOC_Os07g43700.2,LOC_Os07g43700.1 : lactate/malate dehydrogenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048848 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G233400 | Citrate transporter protein, putative, expressed | - |
| 2 | Sobic.001G536800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 3 | Sobic.003G137100 | protoporphyrinogen oxidase, chloroplast precursor, putative, expressed | K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase |
| 4 | Sobic.001G069000 | ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 5 | Sobic.006G225200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cyclin, putative, expressed | - |
| 6 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.010G096300 | -(PubMedID : 22968911)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed | - |
| 8 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 9 | Sobic.004G327700 | tetratricopeptide repeat domain containing protein, putative, expressed | K03255: TIF31, protein TIF31 |
| 10 | Sobic.009G125400 | FZL, putative, expressed | - |
| 11 | Sobic.004G001300 | -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed | K15893: glycerate dehydrogenase |
| 12 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 13 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 14 | Sobic.010G214100 | D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed | K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase |
| 15 | Sobic.006G010900 | expressed protein | - |
| 16 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 17 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 18 | Sobic.003G442700 | - | - |
| 19 | Sobic.001G118100 | B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed | - |
| 20 | Sobic.001G048400 | pheophorbide a oxygenase, chloroplast precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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