Gene annotation
| Transcriptome id | Sobic.004G001300.1 |
|---|---|
| Synonym | Sb04g000320, ATHPR1, HPR |
| Functional annotation | - (PubMedID : 26976818) erythronate-4-phosphate dehydrogenase domain containing protein, expressed |
| UniProt | A0A194YLZ3 |
| Pfam | PF00389 PF02826 |
| Panther DB | PTHR10996 PTHR10996:SF169 |
| NCBI CDD | KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) |
| KEGG Orthology | K15893; glycerate dehydrogenase |
| Gene Ontology | GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G68010 : hydroxypyruvate reductase |
|---|---|
| RAP-DB (Rice) | LOC_Os02g01150.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a018626 |
| Brachypodium | KQJ92736 |
| Barley | HORVU6Hr1G000640.7 , HORVU6Hr1G000640.10 , HORVU6Hr1G000640.12 , HORVU6Hr1G000650.1 , HORVU6Hr1G000650.2 , HORVU6Hr1G000640.8 , HORVU6Hr1G000640.9 , HORVU6Hr1G000640.6 , HORVU6Hr1G000640.4 , HORVU6Hr1G000640.5 , HORVU6Hr1G000640.2 , HORVU6Hr1G000640.3 , HORVU6Hr1G000640.1 |
| Wheat | TraesCS6B02G004400 , TraesCS6D02G001700 , TraesCS6A02G000400 |
| Populus | - |
JBrowse
| Sobic.004G001300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G118100 | B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed | - |
| 2 | Sobic.007G204900 | extracellular ligand-gated ion channel, putative, expressed | - |
| 3 | Sobic.008G001000 | AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 4 | Sobic.003G442700 | - | - |
| 5 | Sobic.003G161000 | powdery mildew resistance protein PM3F, putative, expressed | - |
| 6 | Sobic.001G098301 | - | - |
| 7 | Sobic.003G003600 | similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed | - |
| 8 | Sobic.003G137100 | protoporphyrinogen oxidase, chloroplast precursor, putative, expressed | K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase |
| 9 | Sobic.001G060401 | - | - |
| 10 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 11 | Sobic.003G110700 | nuclear transport factor, putative, expressed | - |
| 12 | Sobic.002G000700 | expressed protein | - |
| 13 | Sobic.003G305000 | Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 14 | Sobic.010G005600 | SEC14 cytosolic factor family protein, putative, expressed | - |
| 15 | Sobic.008G011200 | STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 16 | Sobic.006G249050 | - | - |
| 17 | Sobic.002G114700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.007G052900 | acetyltransferase, GNAT family, putative, expressed | - |
| 19 | Sobic.004G113800 | CAPIP1, putative, expressed | K14496: abscisic acid receptor PYR/PYL family |
| 20 | Sobic.004G359700 | - | - |
Gene co-expression network
Octagon: transcription factors
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