Gene annotation
Transcriptome id Sobic.003G110700.4,Sobic.003G110700.2,Sobic.003G110700.3
Synonym
Functional annotation nuclear transport factor, putative, expressed
UniProt A0A1B6Q2L0 , A0A1B6Q2S5
Pfam PF12680
Panther DB PTHR33698 PTHR33698:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71480 : Nuclear transport factor 2 (NTF2) family protein
RAP-DB (Rice) LOC_Os09g09320.1 : nuclear transport factor, putative, expressed
MaizeGDB (Corn) Zm00025a023902
Brachypodium KQJ81719
Barley HORVU2Hr1G007080.9 , HORVU2Hr1G007080.8 , HORVU2Hr1G007080.1 , HORVU2Hr1G007080.7 , HORVU2Hr1G007080.6 , HORVU2Hr1G007080.11 , HORVU2Hr1G007080.10 , HORVU2Hr1G007080.13 , HORVU2Hr1G007080.12
Wheat TraesCSU02G023200 , TraesCS2A02G046200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.008G062500 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
3 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
4 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G055800 expressed protein -
6 Sobic.008G183200 LOL3, putative, expressed -
7 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
8 Sobic.002G104000 - -
9 Sobic.004G186200 thioredoxin, putative, expressed -
10 Sobic.003G114100 expressed protein -
11 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
12 Sobic.005G036100 phosphoglycerate mutase, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
13 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
14 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
16 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
17 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.007G152600 cytochrome P450, putative, expressed -
19 Sobic.008G078900 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
20 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -


Gene co-expression network
sample Sobic003G110700 Sobic003G110700 Sobic003G305000 Sobic003G305000 Sobic003G110700--Sobic003G305000 Sobic008G062500 Sobic008G062500 Sobic003G110700--Sobic008G062500 Sobic003G137100 Sobic003G137100 Sobic003G110700--Sobic003G137100 Sobic002G114700 Sobic002G114700 Sobic003G110700--Sobic002G114700 Sobic009G055800 Sobic009G055800 Sobic003G110700--Sobic009G055800 Sobic008G183200 Sobic008G183200 Sobic003G110700--Sobic008G183200 Sobic004G001300 Sobic004G001300 Sobic003G110700--Sobic004G001300 Sobic002G104000 Sobic002G104000 Sobic003G110700--Sobic002G104000 Sobic004G186200 Sobic004G186200 Sobic003G110700--Sobic004G186200 Sobic003G305000--Sobic003G110700 Sobic007G213700 Sobic007G213700 Sobic003G305000--Sobic007G213700 Sobic003G305000--Sobic004G001300 Sobic007G204900 Sobic007G204900 Sobic003G305000--Sobic007G204900 Sobic007G152600 Sobic007G152600 Sobic003G305000--Sobic007G152600 Sobic007G132000 Sobic007G132000 Sobic003G305000--Sobic007G132000 Sobic003G068800 Sobic003G068800 Sobic003G305000--Sobic003G068800 Sobic010G096300 Sobic010G096300 Sobic003G305000--Sobic010G096300 Sobic004G122200 Sobic004G122200 Sobic003G305000--Sobic004G122200 Sobic003G412900 Sobic003G412900 Sobic008G062500--Sobic003G412900 Sobic008G062500--Sobic009G055800 Sobic003G077400 Sobic003G077400 Sobic008G062500--Sobic003G077400 Sobic003G160800 Sobic003G160800 Sobic008G062500--Sobic003G160800 Sobic008G062500--Sobic003G110700 Sobic007G085800 Sobic007G085800 Sobic008G062500--Sobic007G085800 Sobic001G168800 Sobic001G168800 Sobic008G062500--Sobic001G168800 Sobic003G439000 Sobic003G439000 Sobic008G062500--Sobic003G439000 Sobic009G164300 Sobic009G164300 Sobic008G062500--Sobic009G164300 Sobic001G536800 Sobic001G536800 Sobic003G137100--Sobic001G536800 Sobic009G085500 Sobic009G085500 Sobic003G137100--Sobic009G085500 Sobic001G069000 Sobic001G069000 Sobic003G137100--Sobic001G069000 Sobic001G495300 Sobic001G495300 Sobic003G137100--Sobic001G495300 Sobic006G010900 Sobic006G010900 Sobic003G137100--Sobic006G010900 Sobic003G137100--Sobic003G412900 Sobic001G233400 Sobic001G233400 Sobic003G137100--Sobic001G233400 Sobic002G000700 Sobic002G000700 Sobic003G137100--Sobic002G000700 Sobic006G103400 Sobic006G103400 Sobic003G137100--Sobic006G103400 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic006G273400 Sobic006G273400 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic002G114700--Sobic003G110700 Sobic007G069400 Sobic007G069400 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic004G035000 Sobic004G035000 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic001G469900 Sobic001G469900 Sobic009G055800--Sobic001G469900 Sobic001G035800 Sobic001G035800 Sobic009G055800--Sobic001G035800 Sobic009G055800--Sobic003G077400 Sobic009G055800--Sobic009G164300 Sobic009G055800--Sobic003G439000 Sobic003G254600 Sobic003G254600 Sobic009G055800--Sobic003G254600 Sobic009G055800--Sobic008G062500 Sobic009G055800--Sobic001G168800 Sobic001G469933 Sobic001G469933 Sobic009G055800--Sobic001G469933 Sobic008G183200--Sobic004G122200 Sobic010G241300 Sobic010G241300 Sobic008G183200--Sobic010G241300 Sobic005G127000 Sobic005G127000 Sobic008G183200--Sobic005G127000 Sobic005G111500 Sobic005G111500 Sobic008G183200--Sobic005G111500 Sobic007G059500 Sobic007G059500 Sobic008G183200--Sobic007G059500 Sobic008G183200--Sobic003G110700 Sobic001G377500 Sobic001G377500 Sobic008G183200--Sobic001G377500 Sobic010G164200 Sobic010G164200 Sobic008G183200--Sobic010G164200 Sobic006G102400 Sobic006G102400 Sobic008G183200--Sobic006G102400 Sobic001G118100 Sobic001G118100 Sobic004G001300--Sobic001G118100 Sobic004G001300--Sobic007G204900 Sobic008G001000 Sobic008G001000 Sobic004G001300--Sobic008G001000 Sobic003G442700 Sobic003G442700 Sobic004G001300--Sobic003G442700 Sobic003G161000 Sobic003G161000 Sobic004G001300--Sobic003G161000 Sobic001G098301 Sobic001G098301 Sobic004G001300--Sobic001G098301 Sobic003G003600 Sobic003G003600 Sobic004G001300--Sobic003G003600 Sobic004G001300--Sobic003G137100 Sobic001G060401 Sobic001G060401 Sobic004G001300--Sobic001G060401 Sobic001G217700 Sobic001G217700 Sobic002G104000--Sobic001G217700 Sobic002G104000--Sobic003G110700 Sobic004G315800 Sobic004G315800 Sobic002G104000--Sobic004G315800 Sobic002G104000--Sobic003G114100 Sobic002G104000--Sobic004G186200 Sobic005G036100 Sobic005G036100 Sobic002G104000--Sobic005G036100 Sobic008G131700 Sobic008G131700 Sobic002G104000--Sobic008G131700 Sobic002G215000 Sobic002G215000 Sobic002G104000--Sobic002G215000 Sobic004G183300 Sobic004G183300 Sobic002G104000--Sobic004G183300 Sobic004G186200--Sobic005G036100 Sobic004G186200--Sobic008G062500 Sobic004G186200--Sobic009G055800 Sobic008G116300 Sobic008G116300 Sobic004G186200--Sobic008G116300 Sobic004G186200--Sobic003G110700 Sobic004G186200--Sobic001G069000 Sobic004G186200--Sobic010G096300 Sobic008G066100 Sobic008G066100 Sobic004G186200--Sobic008G066100 Sobic004G186200--Sobic001G035800
Octagon: transcription factors


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