Gene annotation
| Transcriptome id | Sobic.008G183200.1 |
|---|---|
| Synonym | AtMC2, Sb08g022480, MC2 |
| Functional annotation | LOL3, putative, expressed |
| UniProt | C5YSL0 |
| Pfam | PF00656 |
| Panther DB | PTHR31773 PTHR31773:SF5 |
| NCBI CDD | KOG1546; Metacaspase involved in regulation of apoptosis |
| KEGG Orthology | - |
| Gene Ontology | GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity |
Orthologs (automatic annotation)
| TAIR | AT4G25110 : metacaspase 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g27210.1 : LOL3, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052099 , Zm00025a002724 |
| Brachypodium | KQK21440 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G122200 | expressed protein | - |
| 2 | Sobic.010G241300 | -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed | - |
| 3 | Sobic.005G127000 | Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed | - |
| 4 | Sobic.005G111500 | FHA domain containing protein, putative, expressed | - |
| 5 | Sobic.007G059500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 6 | Sobic.003G110700 | nuclear transport factor, putative, expressed | - |
| 7 | Sobic.001G377500 | POEI47 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 8 | Sobic.010G164200 | osFTL12 FT-Like12 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | K16223: protein FLOWERING LOCUS T |
| 9 | Sobic.006G102400 | transporter family protein, putative, expressed | - |
| 10 | Sobic.003G068800 | Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 11 | Sobic.010G107400 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 12 | Sobic.009G062500 | -(PubMedID : 26976818)@triose phosphate/phosphate translocator, non-green plastid,chloroplast precursor, putative, expressed | K15283: solute carrier family 35, member E1 |
| 13 | Sobic.006G249050 | - | - |
| 14 | Sobic.003G052300 | Raffinose synthase family protein(PubMedID : 26465154)@uncharacterized glycosyltransferase, putative, expressed | K06617: raffinose synthase |
| 15 | Sobic.003G397200 | - | - |
| 16 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 17 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 18 | Sobic.003G305000 | Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 19 | Sobic.009G164300 | riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed | K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II |
| 20 | Sobic.003G114100 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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