Gene annotation
| Transcriptome id | Sobic.008G015100.1 |
|---|---|
| Synonym | AUR3, Gretchen Hagen3, GH3-2, SbGH3-14, YDK1, BRU6, GH3.2, Sb08g001330 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123) OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed |
| UniProt | C5YQL4 |
| Pfam | PF03321 |
| Panther DB | PTHR31901 PTHR31901:SF4 |
| NCBI CDD | - |
| KEGG Orthology | K14487; auxin responsive GH3 gene family |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G37390 : Auxin-responsive GH3 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g40290.1 : OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed |
| MaizeGDB (Corn) | Zm00025a002969 , Zm00025a048626 , Zm00025a027437 |
| Brachypodium | KQK15444 |
| Barley | HORVU2Hr1G034670.4 , HORVU2Hr1G034670.5 , HORVU2Hr1G034670.1 , HORVU2Hr1G034670.2 , HORVU2Hr1G034670.3 |
| Wheat | TraesCS2B02G161700 , TraesCS2D02G191800 , TraesCS2A02G137800 , TraesCS2B02G210600 |
| Populus | - |
JBrowse
| Sobic.008G015100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G189300 | Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08909: light-harvesting complex I chlorophyll a/b binding protein 3 |
| 2 | Sobic.004G272600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 3 | Sobic.001G070500 | Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed | K02694: photosystem I subunit III |
| 4 | Sobic.001G435500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 5 | Sobic.007G136900 | Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08910: light-harvesting complex I chlorophyll a/b binding protein 4 |
| 6 | Sobic.005G099700 | expressed protein | - |
| 7 | Sobic.007G223500 | expressed protein | - |
| 8 | Sobic.008G101400 | - | - |
| 9 | Sobic.005G111200 | PB1 domain containing protein, expressed | - |
| 10 | Sobic.003G088800 | multi-copper oxidase type I family protein, putative, expressed | - |
| 11 | Sobic.003G163700 | Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein | K03676: grxC, GLRX, glutaredoxin 3 |
| 12 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 13 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 14 | Sobic.002G352100 | Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08908: light-harvesting complex I chlorophyll a/b binding protein 2 |
| 15 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 16 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 17 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 19 | Sobic.009G171300 | PX domain containing protein, expressed | - |
| 20 | Sobic.003G369000 | - | - |
Gene co-expression network
Octagon: transcription factors
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