Gene annotation
Transcriptome id Sobic.001G435500.1,Sobic.001G435500.2
Synonym SbNF-YC3, Nuclear Factor Y, NF-YC4, Sb01g040980
Functional annotation tentative name (PubMedID : 31536532)
core histone H2A/H2B/H3/H4, putative, expressed
UniProt A0A1B6QPC5
Pfam PF00808
Panther DB PTHR10252 PTHR10252:SF39
NCBI CDD KOG1657; CCAAT-binding factor, subunit C (HAP5)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63470 : nuclear factor Y, subunit C4
RAP-DB (Rice) LOC_Os03g14669.2,LOC_Os03g14669.1 : core histone H2A/H2B/H3/H4, putative, expressed
MaizeGDB (Corn) Zm00025a004990 , Zm00025a001598
Brachypodium KQK22549 , KQJ98815 , KQJ90692 , PNT77721 , PNT77720
Barley HORVU4Hr1G062890.4 , HORVU7Hr1G048760.3 , HORVU7Hr1G048760.4 , HORVU7Hr1G048760.5 , HORVU7Hr1G048760.6 , HORVU7Hr1G048760.2 , HORVU4Hr1G062890.1 , HORVU4Hr1G062890.3 , HORVU4Hr1G062890.2 , HORVU4Hr1G062890.5
Wheat -
Populus -


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cDNA sequences
Sobic.001G435500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
2 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
3 Sobic.005G099700 expressed protein -
4 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
5 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
6 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
7 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
8 Sobic.001G066600 mTERF domain containing protein, expressed -
9 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
10 Sobic.010G128000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
11 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
13 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
14 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
15 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.002G337001 - -
17 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
18 Sobic.005G055900 expressed protein -
19 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
20 Sobic.008G036350 - -


Gene co-expression network
sample Sobic001G435500 Sobic001G435500 Sobic001G070500 Sobic001G070500 Sobic001G435500--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic001G435500--Sobic010G189300 Sobic005G099700 Sobic005G099700 Sobic001G435500--Sobic005G099700 Sobic007G136900 Sobic007G136900 Sobic001G435500--Sobic007G136900 Sobic002G033900 Sobic002G033900 Sobic001G435500--Sobic002G033900 Sobic004G056900 Sobic004G056900 Sobic001G435500--Sobic004G056900 Sobic009G229700 Sobic009G229700 Sobic001G435500--Sobic009G229700 Sobic001G066600 Sobic001G066600 Sobic001G435500--Sobic001G066600 Sobic006G073500 Sobic006G073500 Sobic001G435500--Sobic006G073500 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic003G052500 Sobic003G052500 Sobic001G070500--Sobic003G052500 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic010G189300--Sobic004G235200 Sobic005G087000 Sobic005G087000 Sobic010G189300--Sobic005G087000 Sobic005G099700--Sobic001G435500 Sobic005G099700--Sobic001G070500 Sobic005G099700--Sobic010G189300 Sobic003G163700 Sobic003G163700 Sobic005G099700--Sobic003G163700 Sobic004G272600 Sobic004G272600 Sobic005G099700--Sobic004G272600 Sobic005G099700--Sobic002G033900 Sobic005G099700--Sobic001G066600 Sobic005G099700--Sobic006G073500 Sobic005G099700--Sobic009G229700 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic001G177000 Sobic001G177000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic010G241000 Sobic010G241000 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic005G152600 Sobic005G152600 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic001G066600--Sobic009G229700 Sobic009G165200 Sobic009G165200 Sobic001G066600--Sobic009G165200 Sobic001G066600--Sobic010G189300 Sobic001G066600--Sobic002G033900 Sobic008G117300 Sobic008G117300 Sobic001G066600--Sobic008G117300 Sobic001G066600--Sobic005G152600 Sobic001G066600--Sobic001G070500 Sobic001G066600--Sobic006G073500 Sobic001G066600--Sobic002G352100 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500
Octagon: transcription factors


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