Gene annotation
Transcriptome id Sobic.005G099700.1
Synonym Sb05g008600
Functional annotation expressed protein
UniProt C5Y1Q0
Pfam -
Panther DB PTHR14241 PTHR14241:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32520 : -
RAP-DB (Rice) LOC_Os11g11330.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a012683
Brachypodium -
Barley HORVU4Hr1G016210.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
2 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
3 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
4 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
5 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
7 Sobic.001G066600 mTERF domain containing protein, expressed -
8 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
9 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
10 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
11 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
12 Sobic.009G171300 PX domain containing protein, expressed -
13 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
14 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
15 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
16 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
17 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
18 Sobic.003G088800 multi-copper oxidase type I family protein, putative, expressed -
19 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
20 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -


Gene co-expression network
sample Sobic005G099700 Sobic005G099700 Sobic001G435500 Sobic001G435500 Sobic005G099700--Sobic001G435500 Sobic001G070500 Sobic001G070500 Sobic005G099700--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic005G099700--Sobic010G189300 Sobic003G163700 Sobic003G163700 Sobic005G099700--Sobic003G163700 Sobic004G272600 Sobic004G272600 Sobic005G099700--Sobic004G272600 Sobic002G033900 Sobic002G033900 Sobic005G099700--Sobic002G033900 Sobic001G066600 Sobic001G066600 Sobic005G099700--Sobic001G066600 Sobic006G073500 Sobic006G073500 Sobic005G099700--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G099700--Sobic009G229700 Sobic001G435500--Sobic001G070500 Sobic001G435500--Sobic010G189300 Sobic001G435500--Sobic005G099700 Sobic007G136900 Sobic007G136900 Sobic001G435500--Sobic007G136900 Sobic001G435500--Sobic002G033900 Sobic004G056900 Sobic004G056900 Sobic001G435500--Sobic004G056900 Sobic001G435500--Sobic009G229700 Sobic001G435500--Sobic001G066600 Sobic001G435500--Sobic006G073500 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic003G052500 Sobic003G052500 Sobic001G070500--Sobic003G052500 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic010G189300--Sobic004G235200 Sobic005G087000 Sobic005G087000 Sobic010G189300--Sobic005G087000 Sobic003G163700--Sobic005G099700 Sobic003G163700--Sobic001G435500 Sobic005G111200 Sobic005G111200 Sobic003G163700--Sobic005G111200 Sobic008G117300 Sobic008G117300 Sobic003G163700--Sobic008G117300 Sobic008G015100 Sobic008G015100 Sobic003G163700--Sobic008G015100 Sobic009G171300 Sobic009G171300 Sobic003G163700--Sobic009G171300 Sobic003G163700--Sobic004G272600 Sobic003G163700--Sobic001G066600 Sobic005G204000 Sobic005G204000 Sobic003G163700--Sobic005G204000 Sobic004G272600--Sobic001G070500 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic004G272600--Sobic002G033900 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G272600--Sobic004G235200 Sobic004G272600--Sobic008G015100 Sobic004G272600--Sobic009G229700 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic010G241000 Sobic010G241000 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic001G066600--Sobic009G229700 Sobic009G165200 Sobic009G165200 Sobic001G066600--Sobic009G165200 Sobic001G066600--Sobic010G189300 Sobic001G066600--Sobic002G033900 Sobic001G066600--Sobic008G117300 Sobic005G152600 Sobic005G152600 Sobic001G066600--Sobic005G152600 Sobic001G066600--Sobic001G070500 Sobic001G066600--Sobic006G073500 Sobic001G066600--Sobic002G352100 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100
Octagon: transcription factors


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