Gene annotation
| Transcriptome id | Sobic.003G163700.1 |
|---|---|
| Synonym | Sb03g014800 |
| Functional annotation | Glutaredoxin family protein (Os) (PubMedID : 27208977) expressed protein |
| UniProt | C5XKK1 |
| Pfam | PF00462 |
| Panther DB | PTHR10168 PTHR10168:SF92 |
| NCBI CDD | KOG1752; Glutaredoxin and related proteins |
| KEGG Orthology | K03676; grxC, GLRX, glutaredoxin 3 |
| Gene Ontology | GO:0015035; protein disulfide oxidoreductase activity GO:0009055electron transfer activity |
Orthologs (automatic annotation)
| TAIR | AT3G21460 : Glutaredoxin family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g27140.1 : OsGrx_C7 - glutaredoxin subgroup III, expressed |
| MaizeGDB (Corn) | Zm00025a024551 , Zm00025a024553 , Zm00025a054354 |
| Brachypodium | KQK04322 |
| Barley | HORVU5Hr1G010950.1 , HORVU5Hr1G010870.2 , HORVU5Hr1G010870.1 , HORVU5Hr1G025710.2 , HORVU5Hr1G025710.1 , HORVU5Hr1G010960.1 , HORVU5Hr1G010870.3 |
| Wheat | TraesCS5A02G044200 , TraesCS5A02G045100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G099700 | expressed protein | - |
| 2 | Sobic.001G435500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 3 | Sobic.005G111200 | PB1 domain containing protein, expressed | - |
| 4 | Sobic.008G117300 | Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 5 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 6 | Sobic.009G171300 | PX domain containing protein, expressed | - |
| 7 | Sobic.004G272600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 8 | Sobic.001G066600 | mTERF domain containing protein, expressed | - |
| 9 | Sobic.005G204000 | OsGrx_C17 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 10 | Sobic.010G189300 | Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08909: light-harvesting complex I chlorophyll a/b binding protein 3 |
| 11 | Sobic.001G169200 | "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 12 | Sobic.010G128000 | aspartic proteinase nepenthesin-2 precursor, putative, expressed | - |
| 13 | Sobic.005G055900 | expressed protein | - |
| 14 | Sobic.001G070500 | Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed | K02694: photosystem I subunit III |
| 15 | Sobic.005G203900 | OsGrx_C17 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 16 | Sobic.004G144700 | ABC transporter family protein, putative, expressed | - |
| 17 | Sobic.003G088800 | multi-copper oxidase type I family protein, putative, expressed | - |
| 18 | Sobic.001G463200 | BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed | - |
| 19 | Sobic.002G064000 | expressed protein | - |
| 20 | Sobic.007G090475 | - | - |
Gene co-expression network
Octagon: transcription factors
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