Gene annotation
Transcriptome id Sobic.005G111200.1
Synonym Sb05g012960
Functional annotation PB1 domain containing protein, expressed
UniProt C5Y276
Pfam PF00564
Panther DB PTHR31066 PTHR31066:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G26510 : Octicosapeptide/Phox/Bem1p family protein
RAP-DB (Rice) LOC_Os11g25780.1 : PB1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029702
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G111200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
2 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
3 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
4 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.010G164200 osFTL12 FT-Like12 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
6 Sobic.009G171300 PX domain containing protein, expressed -
7 Sobic.008G016250 - -
8 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
9 Sobic.005G099700 expressed protein -
10 Sobic.002G000700 expressed protein -
11 Sobic.004G122200 expressed protein -
12 Sobic.001G169200 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
13 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
14 Sobic.004G035601 - -
15 Sobic.007G213700 -(PubMedID : 26976818)@aminotransferase, putative, expressed K00830: alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase
16 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
17 Sobic.002G064000 expressed protein -
18 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.004G144700 ABC transporter family protein, putative, expressed -
20 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III


Gene co-expression network
sample Sobic005G111200 Sobic005G111200 Sobic003G163700 Sobic003G163700 Sobic005G111200--Sobic003G163700 Sobic008G015100 Sobic008G015100 Sobic005G111200--Sobic008G015100 Sobic001G463200 Sobic001G463200 Sobic005G111200--Sobic001G463200 Sobic004G272600 Sobic004G272600 Sobic005G111200--Sobic004G272600 Sobic010G164200 Sobic010G164200 Sobic005G111200--Sobic010G164200 Sobic009G171300 Sobic009G171300 Sobic005G111200--Sobic009G171300 Sobic008G016250 Sobic008G016250 Sobic005G111200--Sobic008G016250 Sobic001G425400 Sobic001G425400 Sobic005G111200--Sobic001G425400 Sobic005G099700 Sobic005G099700 Sobic005G111200--Sobic005G099700 Sobic003G163700--Sobic005G099700 Sobic001G435500 Sobic001G435500 Sobic003G163700--Sobic001G435500 Sobic003G163700--Sobic005G111200 Sobic008G117300 Sobic008G117300 Sobic003G163700--Sobic008G117300 Sobic003G163700--Sobic008G015100 Sobic003G163700--Sobic009G171300 Sobic003G163700--Sobic004G272600 Sobic001G066600 Sobic001G066600 Sobic003G163700--Sobic001G066600 Sobic005G204000 Sobic005G204000 Sobic003G163700--Sobic005G204000 Sobic010G189300 Sobic010G189300 Sobic008G015100--Sobic010G189300 Sobic008G015100--Sobic004G272600 Sobic001G070500 Sobic001G070500 Sobic008G015100--Sobic001G070500 Sobic008G015100--Sobic001G435500 Sobic007G136900 Sobic007G136900 Sobic008G015100--Sobic007G136900 Sobic008G015100--Sobic005G099700 Sobic007G223500 Sobic007G223500 Sobic008G015100--Sobic007G223500 Sobic008G101400 Sobic008G101400 Sobic008G015100--Sobic008G101400 Sobic008G015100--Sobic005G111200 Sobic001G463200--Sobic004G272600 Sobic008G026800 Sobic008G026800 Sobic001G463200--Sobic008G026800 Sobic004G035601 Sobic004G035601 Sobic001G463200--Sobic004G035601 Sobic002G064000 Sobic002G064000 Sobic001G463200--Sobic002G064000 Sobic006G147300 Sobic006G147300 Sobic001G463200--Sobic006G147300 Sobic006G051300 Sobic006G051300 Sobic001G463200--Sobic006G051300 Sobic001G463200--Sobic005G111200 Sobic001G463200--Sobic008G015100 Sobic008G053200 Sobic008G053200 Sobic001G463200--Sobic008G053200 Sobic004G272600--Sobic001G070500 Sobic004G272600--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G272600--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic004G272600--Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700 Sobic006G102400 Sobic006G102400 Sobic010G164200--Sobic006G102400 Sobic004G122200 Sobic004G122200 Sobic010G164200--Sobic004G122200 Sobic010G164200--Sobic005G111200 Sobic008G183200 Sobic008G183200 Sobic010G164200--Sobic008G183200 Sobic002G000700 Sobic002G000700 Sobic010G164200--Sobic002G000700 Sobic006G160400 Sobic006G160400 Sobic010G164200--Sobic006G160400 Sobic010G107400 Sobic010G107400 Sobic010G164200--Sobic010G107400 Sobic006G249050 Sobic006G249050 Sobic010G164200--Sobic006G249050 Sobic004G001300 Sobic004G001300 Sobic010G164200--Sobic004G001300 Sobic009G171300--Sobic005G099700 Sobic009G171300--Sobic003G163700 Sobic009G171300--Sobic008G015100 Sobic009G171300--Sobic004G272600 Sobic009G171300--Sobic005G111200 Sobic009G171300--Sobic010G189300 Sobic009G171300--Sobic001G066600 Sobic009G171300--Sobic001G463200 Sobic009G171300--Sobic008G101400 Sobic008G016250--Sobic004G035601 Sobic008G016250--Sobic005G111200 Sobic003G404900 Sobic003G404900 Sobic008G016250--Sobic003G404900 Sobic008G016250--Sobic006G051300 Sobic008G016250--Sobic001G463200 Sobic004G026700 Sobic004G026700 Sobic008G016250--Sobic004G026700 Sobic008G016250--Sobic003G163700 Sobic010G108401 Sobic010G108401 Sobic008G016250--Sobic010G108401 Sobic001G184100 Sobic001G184100 Sobic008G016250--Sobic001G184100 Sobic008G066100 Sobic008G066100 Sobic001G425400--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic001G425400--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic001G425400--Sobic008G134800 Sobic007G207800 Sobic007G207800 Sobic001G425400--Sobic007G207800 Sobic004G308700 Sobic004G308700 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic004G272100 Sobic004G272100 Sobic001G425400--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic005G099700--Sobic001G435500 Sobic005G099700--Sobic001G070500 Sobic005G099700--Sobic010G189300 Sobic005G099700--Sobic003G163700 Sobic005G099700--Sobic004G272600 Sobic005G099700--Sobic002G033900 Sobic005G099700--Sobic001G066600 Sobic005G099700--Sobic006G073500 Sobic005G099700--Sobic009G229700
Octagon: transcription factors


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