Gene annotation
| Transcriptome id | Sobic.007G213700.1 |
|---|---|
| Synonym | Sb07g028080, SGAT, AGT, AGT, SGAT , AGT1 |
| Functional annotation | - (PubMedID : 26976818) aminotransferase, putative, expressed |
| UniProt | C5YJ49 |
| Pfam | PF00155 |
| Panther DB | PTHR21152 PTHR21152:SF21 |
| NCBI CDD | KOG2862; Alanine-glyoxylate aminotransferase AGT1 |
| KEGG Orthology | K00830; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase |
| Gene Ontology | GO:0009058; biosynthetic process |
Orthologs (automatic annotation)
| TAIR | AT2G13360 : alanine:glyoxylate aminotransferase |
|---|---|
| RAP-DB (Rice) | LOC_Os08g39300.4 : aminotransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005033 , Zm00025a005025 |
| Brachypodium | KQJ98887 |
| Barley | HORVU7Hr1G049870.3 , HORVU7Hr1G049870.2 , HORVU7Hr1G049870.1 |
| Wheat | TraesCS7B02G148000 |
| Populus | - |
JBrowse
| Sobic.007G213700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G204900 | extracellular ligand-gated ion channel, putative, expressed | - |
| 2 | Sobic.002G000700 | expressed protein | - |
| 3 | Sobic.003G305000 | Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 4 | Sobic.004G201700 | glycosyl transferase family 17 protein, putative, expressed | K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase |
| 5 | Sobic.006G249050 | - | - |
| 6 | Sobic.004G122200 | expressed protein | - |
| 7 | Sobic.001G003200 | RNApolymerase sigma-subunit F(PubMedID : 26465154)@RNA polymerase sigma factor, putative, expressed | K03086: RNA polymerase primary sigma factor |
| 8 | Sobic.006G135100 | B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed | - |
| 9 | Sobic.001G158900 | helix-loop-helix DNA-binding domain containing protein, expressed | K16189: phytochrome-interacting factor 4 |
| 10 | Sobic.001G098301 | - | - |
| 11 | Sobic.001G065600 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 12 | Sobic.004G001300 | -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed | K15893: glycerate dehydrogenase |
| 13 | Sobic.007G150100 | HD domain containing protein, putative, expressed | - |
| 14 | Sobic.008G094000 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 15 | Sobic.009G143500 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 16 | Sobic.006G188000 | expressed protein | - |
| 17 | Sobic.001G353250 | - | - |
| 18 | Sobic.005G111200 | PB1 domain containing protein, expressed | - |
| 19 | Sobic.010G049000 | expressed protein | - |
| 20 | Sobic.003G292600 | HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed | K14490: histidine-containing phosphotransfer peotein |
Gene co-expression network
Octagon: transcription factors
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