Gene annotation
Transcriptome id Sobic.004G122200.1
Synonym
Functional annotation expressed protein
UniProt A0A194YP83
Pfam PF03478
Panther DB PTHR33127
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g07430.1 : expressed protein
MaizeGDB (Corn) Zm00025a019847
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G122200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G183200 LOL3, putative, expressed -
2 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
3 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
4 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
5 Sobic.010G164200 osFTL12 FT-Like12 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
6 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
7 Sobic.001G068301 - K16189: phytochrome-interacting factor 4
8 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
9 Sobic.001G377500 POEI47 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.007G213700 -(PubMedID : 26976818)@aminotransferase, putative, expressed K00830: alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase
11 Sobic.006G051300 expressed protein -
12 Sobic.006G102400 transporter family protein, putative, expressed -
13 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
14 Sobic.005G111500 FHA domain containing protein, putative, expressed -
15 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
16 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
17 Sobic.003G068800 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.005G111200 PB1 domain containing protein, expressed -
19 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
20 Sobic.006G249050 - -


Gene co-expression network
sample Sobic004G122200 Sobic004G122200 Sobic008G183200 Sobic008G183200 Sobic004G122200--Sobic008G183200 Sobic005G127000 Sobic005G127000 Sobic004G122200--Sobic005G127000 Sobic010G241300 Sobic010G241300 Sobic004G122200--Sobic010G241300 Sobic008G066100 Sobic008G066100 Sobic004G122200--Sobic008G066100 Sobic010G164200 Sobic010G164200 Sobic004G122200--Sobic010G164200 Sobic008G015100 Sobic008G015100 Sobic004G122200--Sobic008G015100 Sobic001G068301 Sobic001G068301 Sobic004G122200--Sobic001G068301 Sobic001G338700 Sobic001G338700 Sobic004G122200--Sobic001G338700 Sobic001G377500 Sobic001G377500 Sobic004G122200--Sobic001G377500 Sobic008G183200--Sobic004G122200 Sobic008G183200--Sobic010G241300 Sobic008G183200--Sobic005G127000 Sobic005G111500 Sobic005G111500 Sobic008G183200--Sobic005G111500 Sobic007G059500 Sobic007G059500 Sobic008G183200--Sobic007G059500 Sobic003G110700 Sobic003G110700 Sobic008G183200--Sobic003G110700 Sobic008G183200--Sobic001G377500 Sobic008G183200--Sobic010G164200 Sobic006G102400 Sobic006G102400 Sobic008G183200--Sobic006G102400 Sobic005G127000--Sobic007G059500 Sobic005G127000--Sobic008G183200 Sobic005G127000--Sobic010G241300 Sobic005G127000--Sobic004G122200 Sobic005G127000--Sobic001G377500 Sobic001G186200 Sobic001G186200 Sobic005G127000--Sobic001G186200 Sobic010G225600 Sobic010G225600 Sobic005G127000--Sobic010G225600 Sobic001G498300 Sobic001G498300 Sobic005G127000--Sobic001G498300 Sobic008G151000 Sobic008G151000 Sobic005G127000--Sobic008G151000 Sobic010G241300--Sobic008G183200 Sobic010G241300--Sobic007G059500 Sobic010G241300--Sobic005G127000 Sobic010G241300--Sobic004G122200 Sobic003G397200 Sobic003G397200 Sobic010G241300--Sobic003G397200 Sobic006G010800 Sobic006G010800 Sobic010G241300--Sobic006G010800 Sobic009G034600 Sobic009G034600 Sobic010G241300--Sobic009G034600 Sobic010G241300--Sobic005G111500 Sobic007G213300 Sobic007G213300 Sobic010G241300--Sobic007G213300 Sobic001G425400 Sobic001G425400 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic004G308700 Sobic004G308700 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic004G272100 Sobic004G272100 Sobic008G066100--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic010G164200--Sobic006G102400 Sobic010G164200--Sobic004G122200 Sobic005G111200 Sobic005G111200 Sobic010G164200--Sobic005G111200 Sobic010G164200--Sobic008G183200 Sobic002G000700 Sobic002G000700 Sobic010G164200--Sobic002G000700 Sobic006G160400 Sobic006G160400 Sobic010G164200--Sobic006G160400 Sobic010G107400 Sobic010G107400 Sobic010G164200--Sobic010G107400 Sobic006G249050 Sobic006G249050 Sobic010G164200--Sobic006G249050 Sobic004G001300 Sobic004G001300 Sobic010G164200--Sobic004G001300 Sobic010G189300 Sobic010G189300 Sobic008G015100--Sobic010G189300 Sobic004G272600 Sobic004G272600 Sobic008G015100--Sobic004G272600 Sobic001G070500 Sobic001G070500 Sobic008G015100--Sobic001G070500 Sobic001G435500 Sobic001G435500 Sobic008G015100--Sobic001G435500 Sobic007G136900 Sobic007G136900 Sobic008G015100--Sobic007G136900 Sobic005G099700 Sobic005G099700 Sobic008G015100--Sobic005G099700 Sobic008G015100--Sobic007G223500 Sobic008G101400 Sobic008G101400 Sobic008G015100--Sobic008G101400 Sobic008G015100--Sobic005G111200 Sobic001G068301--Sobic004G122200 Sobic001G068301--Sobic010G225600 Sobic005G097800 Sobic005G097800 Sobic001G068301--Sobic005G097800 Sobic003G292600 Sobic003G292600 Sobic001G068301--Sobic003G292600 Sobic001G224900 Sobic001G224900 Sobic001G068301--Sobic001G224900 Sobic001G048000 Sobic001G048000 Sobic001G068301--Sobic001G048000 Sobic006G135100 Sobic006G135100 Sobic001G068301--Sobic006G135100 Sobic002G286400 Sobic002G286400 Sobic001G068301--Sobic002G286400 Sobic005G055900 Sobic005G055900 Sobic001G068301--Sobic005G055900 Sobic003G052500 Sobic003G052500 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic010G109500 Sobic010G109500 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic004G056900 Sobic004G056900 Sobic001G338700--Sobic004G056900 Sobic007G071500 Sobic007G071500 Sobic001G338700--Sobic007G071500 Sobic001G338700--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic001G338700--Sobic003G209800 Sobic001G338700--Sobic004G035500 Sobic001G377500--Sobic005G127000 Sobic002G001800 Sobic002G001800 Sobic001G377500--Sobic002G001800 Sobic001G377500--Sobic008G183200 Sobic003G068800 Sobic003G068800 Sobic001G377500--Sobic003G068800 Sobic001G377500--Sobic007G059500 Sobic001G377500--Sobic004G122200 Sobic001G377500--Sobic010G241300 Sobic010G218600 Sobic010G218600 Sobic001G377500--Sobic010G218600 Sobic001G377500--Sobic010G225600
Octagon: transcription factors


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