Gene annotation
Transcriptome id Sobic.009G164300.3,Sobic.009G164300.1,Sobic.009G164300.2
Synonym Sb09g022620
Functional annotation riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
UniProt A0A1Z5R333 , A0A1Z5R2X8 , A0A1Z5R3N8
Pfam PF00926 PF00925
Panther DB PTHR21327 PTHR21327:SF7
NCBI CDD KOG1284; Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
KEGG Orthology K14652; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
Gene Ontology GO:0009231; riboflavin biosynthetic process GO:00086863,4-dihydroxy-2-butanone-4-phosphate synthase activity GO:0003935GTP cyclohydrolase II activity


Orthologs (automatic annotation)
TAIR AT5G59750 : DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
RAP-DB (Rice) LOC_Os05g38570.1 : riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037704
Brachypodium KQK05896
Barley HORVU1Hr1G072180.12 , HORVU1Hr1G072180.11 , HORVU1Hr1G072180.10 , HORVU1Hr1G072180.8 , HORVU1Hr1G072180.7 , HORVU1Hr1G072180.6 , HORVU1Hr1G072180.5 , HORVU1Hr1G072180.4 , HORVU1Hr1G072180.3 , HORVU1Hr1G072180.2 , HORVU1Hr1G072180.1
Wheat TraesCS1A02G285400 , TraesCS1B02G294600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G223500 expressed protein -
2 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
3 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
4 Sobic.009G055800 expressed protein -
5 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
6 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
7 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
8 Sobic.008G134800 shikimate kinase, putative, expressed -
9 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
10 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
11 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
12 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
13 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
14 Sobic.003G439000 rubredoxin family protein, putative, expressed -
15 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
16 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
17 Sobic.003G435800 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed K13600: chlorophyllide a oxygenase
18 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
20 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -


Gene co-expression network
sample Sobic009G164300 Sobic009G164300 Sobic007G223500 Sobic007G223500 Sobic009G164300--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic009G164300--Sobic001G425400 Sobic002G316700 Sobic002G316700 Sobic009G164300--Sobic002G316700 Sobic009G055800 Sobic009G055800 Sobic009G164300--Sobic009G055800 Sobic009G143100 Sobic009G143100 Sobic009G164300--Sobic009G143100 Sobic004G175500 Sobic004G175500 Sobic009G164300--Sobic004G175500 Sobic008G066100 Sobic008G066100 Sobic009G164300--Sobic008G066100 Sobic008G134800 Sobic008G134800 Sobic009G164300--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G164300--Sobic003G387800 Sobic007G223500--Sobic002G316700 Sobic007G207800 Sobic007G207800 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G071500 Sobic007G071500 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic001G425400--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic004G308700 Sobic004G308700 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic004G272100 Sobic004G272100 Sobic001G425400--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic002G316700--Sobic008G134800 Sobic001G177000 Sobic001G177000 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic001G469900 Sobic001G469900 Sobic009G055800--Sobic001G469900 Sobic001G035800 Sobic001G035800 Sobic009G055800--Sobic001G035800 Sobic003G077400 Sobic003G077400 Sobic009G055800--Sobic003G077400 Sobic009G055800--Sobic009G164300 Sobic003G439000 Sobic003G439000 Sobic009G055800--Sobic003G439000 Sobic003G254600 Sobic003G254600 Sobic009G055800--Sobic003G254600 Sobic008G062500 Sobic008G062500 Sobic009G055800--Sobic008G062500 Sobic001G168800 Sobic001G168800 Sobic009G055800--Sobic001G168800 Sobic001G469933 Sobic001G469933 Sobic009G055800--Sobic001G469933 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic009G143100--Sobic004G249800 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic009G030900 Sobic009G030900 Sobic004G175500--Sobic009G030900 Sobic008G066100--Sobic001G425400 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic008G066100--Sobic007G207800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic008G066100--Sobic004G035500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G002300 Sobic003G002300 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic007G052400 Sobic007G052400 Sobic003G387800--Sobic007G052400 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800
Octagon: transcription factors


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