Gene annotation
Transcriptome id Sobic.009G143100.1
Synonym PETC, Sb09g020820, PGR1
Functional annotation cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
UniProt C5YY74
Pfam PF00355 PF08802
Panther DB PTHR10134 PTHR10134:SF5
NCBI CDD KOG1671; Ubiquinol cytochrome c reductase, subunit RIP1
KEGG Orthology K02636; cytochrome b6-f complex iron-sulfur subunit
Gene Ontology GO:0016491; oxidoreductase activity GO:0009496plastoquinol--plastocyanin reductase activity GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors


Orthologs (automatic annotation)
TAIR AT4G03280 : photosynthetic electron transfer C
RAP-DB (Rice) LOC_Os07g37030.1 : cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a019955
Brachypodium KQK15806
Barley HORVU2Hr1G041610.2 , HORVU2Hr1G041610.3 , HORVU2Hr1G041610.4 , HORVU2Hr1G041610.1
Wheat TraesCS2A02G207900 , TraesCS2B02G234500 , TraesCS2D02G214700
Populus -


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cDNA sequences
Sobic.009G143100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
2 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
3 Sobic.007G223500 expressed protein -
4 Sobic.008G134800 shikimate kinase, putative, expressed -
5 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
6 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
8 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
9 Sobic.004G249800 expressed protein -
10 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
11 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
12 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
13 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
14 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
15 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G033800 expressed protein -
17 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
18 Sobic.005G194100 expressed protein -
19 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
20 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN


Gene co-expression network
sample Sobic009G143100 Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic009G143100--Sobic007G071500 Sobic002G316700 Sobic002G316700 Sobic009G143100--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic009G143100--Sobic007G223500 Sobic008G134800 Sobic008G134800 Sobic009G143100--Sobic008G134800 Sobic003G387800 Sobic003G387800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic009G143100--Sobic004G249800 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic002G316700--Sobic008G134800 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic001G425400 Sobic001G425400 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic008G066100 Sobic008G066100 Sobic007G223500--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic007G004800 Sobic007G004800 Sobic003G387800--Sobic007G004800 Sobic003G002300 Sobic003G002300 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic003G387800--Sobic009G030900 Sobic007G052400 Sobic007G052400 Sobic003G387800--Sobic007G052400 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800 Sobic009G140600--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic009G140600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic005G194100 Sobic005G194100 Sobic009G140600--Sobic005G194100 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G043000 Sobic009G043000 Sobic009G140600--Sobic009G043000 Sobic001G417200--Sobic009G143100 Sobic001G417200--Sobic007G071500 Sobic001G417200--Sobic002G316700 Sobic001G417200--Sobic007G223500 Sobic006G093900 Sobic006G093900 Sobic001G417200--Sobic006G093900 Sobic001G035800 Sobic001G035800 Sobic001G417200--Sobic001G035800 Sobic001G417200--Sobic003G387800 Sobic001G029100 Sobic001G029100 Sobic001G417200--Sobic001G029100 Sobic001G417200--Sobic007G004800 Sobic001G078000 Sobic001G078000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic005G042000 Sobic005G042000 Sobic006G105900--Sobic005G042000 Sobic006G105900--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic006G105900--Sobic010G241000 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic006G234100 Sobic006G234100 Sobic004G249800--Sobic006G234100 Sobic004G249800--Sobic004G035500 Sobic004G249800--Sobic003G359100 Sobic004G249800--Sobic008G134800 Sobic003G132100 Sobic003G132100 Sobic004G249800--Sobic003G132100 Sobic004G249800--Sobic005G042000
Octagon: transcription factors


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