Gene annotation
| Transcriptome id | Sobic.004G249800.1,Sobic.004G249800.2 |
|---|---|
| Synonym | Sb04g028950 |
| Functional annotation | expressed protein |
| UniProt | A0A1Z5RPI7 , A0A194YRF9 |
| Pfam | PF14159 |
| Panther DB | PTHR33222 PTHR33222:SF4 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G01150 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os06g15400.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a032650 , Zm00025a042699 |
| Brachypodium | - |
| Barley | HORVU6Hr1G073100.9 , HORVU6Hr1G073100.8 , HORVU6Hr1G073100.3 , HORVU6Hr1G073100.2 , HORVU6Hr1G073100.1 , HORVU6Hr1G073100.7 , HORVU6Hr1G073100.6 , HORVU6Hr1G073100.5 , HORVU6Hr1G073100.4 |
| Wheat | TraesCS6D02G273900 , TraesCS6D02G273900 , TraesCS6B02G323200 , TraesCS6B02G323200 |
| Populus | - |
JBrowse
| Sobic.004G249800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 2 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 3 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 4 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 5 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 6 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 7 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 8 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 9 | Sobic.005G042000 | Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed | K01602: ribulose-bisphosphate carboxylase small chain |
| 10 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 11 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
| 12 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 13 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 14 | Sobic.006G264900 | -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed | K03403: chlH, magnesium chelatase subunit H |
| 15 | Sobic.010G109500 | expressed protein | - |
| 16 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 17 | Sobic.001G078000 | Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed | - |
| 18 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 20 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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