Gene annotation
| Transcriptome id | Sobic.003G132100.1 |
|---|---|
| Synonym | ACSF, CHL27, CRD1, Sb03g011270 |
| Functional annotation | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed |
| UniProt | C5XHA9 |
| Pfam | PF02915 |
| Panther DB | PTHR31053 PTHR31053:SF2 |
| NCBI CDD | - |
| KEGG Orthology | K04035; E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT3G56940 : dicarboxylate diiron protein, putative (Crd1) |
|---|---|
| RAP-DB (Rice) | LOC_Os01g17170.1 : magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035200 , Zm00025a024150 |
| Brachypodium | KQK03943 , KQK03942 |
| Barley | HORVU3Hr1G039930.5 , HORVU3Hr1G039930.4 , HORVU3Hr1G039930.1 , HORVU3Hr1G039930.3 , HORVU3Hr1G039930.2 |
| Wheat | TraesCS3D02G194300 , TraesCS3A02G191700 , TraesCS3A02G191700 , TraesCS3A02G191700 , TraesCS3B02G219700 , TraesCS3A02G191700 , TraesCS3B02G219700 |
| Populus | - |
JBrowse
| Sobic.003G132100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 2 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 3 | Sobic.003G197400 | Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed | K06444: lcyE, lycopene epsilon-cyclase |
| 4 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 5 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 6 | Sobic.003G433900 | expressed protein | - |
| 7 | Sobic.004G249800 | expressed protein | - |
| 8 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 9 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 10 | Sobic.002G033800 | expressed protein | - |
| 11 | Sobic.009G091850 | - | - |
| 12 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 13 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 14 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 15 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 16 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
| 17 | Sobic.001G041800 | -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed | K03404: chlD, magnesium chelatase subunit D |
| 18 | Sobic.007G029300 | acyl-activating enzyme 14, putative, expressed | K14760: acyl-activating enzyme 14 |
| 19 | Sobic.002G297300 | expressed protein | - |
| 20 | Sobic.007G116950 | - | - |
Gene co-expression network
Octagon: transcription factors
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