Gene annotation
Transcriptome id Sobic.006G234100.1
Synonym Sb06g030160, HEMA1
Functional annotation shikimate/quinate 5-dehydrogenase, putative, expressed
UniProt C5Y8W9
Pfam PF03807 PF00745 PF05201
Panther DB PTHR13812 PTHR13812:SF20
NCBI CDD -
KEGG Orthology K02492; glutamyl-tRNA reductase
Gene Ontology GO:0008883; glutamyl-tRNA reductase activity


Orthologs (automatic annotation)
TAIR AT1G58290 : Glutamyl-tRNA reductase family protein
RAP-DB (Rice) LOC_Os10g35840.1 : shikimate/quinate 5-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a017483 , Zm00025a057153 , Zm00025a006419
Brachypodium PNT67652 , KQJ94535
Barley HORVU1Hr1G045590.2 , HORVU1Hr1G045590.3 , HORVU1Hr1G045590.1 , HORVU1Hr1G045590.4 , HORVU1Hr1G045590.5 , HORVU7Hr1G026300.6 , HORVU7Hr1G026300.7 , HORVU7Hr1G026300.4 , HORVU7Hr1G026300.5 , HORVU7Hr1G026300.2 , HORVU7Hr1G026300.3 , HORVU7Hr1G026300.1 , HORVU1Hr1G011520.6 , HORVU1Hr1G011520.4 , HORVU1Hr1G011520.5 , HORVU1Hr1G011520.2 , HORVU1Hr1G011520.3 , HORVU1Hr1G011520.1
Wheat TraesCS7D02G122600 , TraesCS1B02G075200 , TraesCS1A02G057200 , TraesCS1A02G173100 , TraesCS1D02G058300 , TraesCS1D02G058300 , TraesCS1A02G173100 , TraesCS1D02G165600 , TraesCS1A02G057200 , TraesCS7B02G024500 , TraesCS1B02G191200 , TraesCS7B02G024500 , TraesCS7A02G125600
Populus -


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cDNA sequences
Sobic.006G234100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G109500 expressed protein -
2 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
3 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
4 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
5 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
6 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
7 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
8 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
9 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
10 Sobic.004G249800 expressed protein -
11 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
12 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
14 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
15 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
16 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
17 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
18 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
19 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -


Gene co-expression network
sample Sobic006G234100 Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic006G234100--Sobic010G109500 Sobic001G448400 Sobic001G448400 Sobic006G234100--Sobic001G448400 Sobic002G339200 Sobic002G339200 Sobic006G234100--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic006G234100--Sobic004G343300 Sobic010G241000 Sobic010G241000 Sobic006G234100--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic009G234600 Sobic009G234600 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800
Octagon: transcription factors


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