Gene annotation
Transcriptome id Sobic.001G364100.1
Synonym Sb01g034720
Functional annotation mTERF domain containing protein, expressed
UniProt A0A1B6QN17
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF22
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT2G36000 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os03g24590.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002572 , Zm00025a052324
Brachypodium KQK21596
Barley HORVU4Hr1G045210.1 , HORVU4Hr1G045210.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
2 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
3 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
4 Sobic.010G109500 expressed protein -
5 Sobic.002G264800 unknown(PubMedID : 29017446)@expressed protein -
6 Sobic.006G136500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
8 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
9 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
10 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
11 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
12 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
13 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
14 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
15 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
16 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
17 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
19 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
20 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV


Gene co-expression network
sample Sobic001G364100 Sobic001G364100 Sobic006G234100 Sobic006G234100 Sobic001G364100--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G364100--Sobic002G339200 Sobic010G241000 Sobic010G241000 Sobic001G364100--Sobic010G241000 Sobic010G109500 Sobic010G109500 Sobic001G364100--Sobic010G109500 Sobic002G264800 Sobic002G264800 Sobic001G364100--Sobic002G264800 Sobic006G136500 Sobic006G136500 Sobic001G364100--Sobic006G136500 Sobic001G078000 Sobic001G078000 Sobic001G364100--Sobic001G078000 Sobic009G234600 Sobic009G234600 Sobic001G364100--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic001G364100--Sobic002G329600 Sobic006G234100--Sobic010G109500 Sobic001G448400 Sobic001G448400 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G234100--Sobic003G052500 Sobic006G234100--Sobic002G329600 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic007G029300 Sobic007G029300 Sobic002G339200--Sobic007G029300 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic007G212400 Sobic007G212400 Sobic002G264800--Sobic007G212400 Sobic002G264800--Sobic001G364100 Sobic001G382100 Sobic001G382100 Sobic002G264800--Sobic001G382100 Sobic002G264800--Sobic001G448400 Sobic009G091850 Sobic009G091850 Sobic002G264800--Sobic009G091850 Sobic002G264800--Sobic002G339200 Sobic003G099400 Sobic003G099400 Sobic002G264800--Sobic003G099400 Sobic002G264800--Sobic002G329600 Sobic002G264800--Sobic006G234100 Sobic006G136500--Sobic001G364100 Sobic006G136500--Sobic006G234100 Sobic006G136500--Sobic010G109500 Sobic002G040100 Sobic002G040100 Sobic006G136500--Sobic002G040100 Sobic009G132900 Sobic009G132900 Sobic006G136500--Sobic009G132900 Sobic009G191300 Sobic009G191300 Sobic006G136500--Sobic009G191300 Sobic003G057900 Sobic003G057900 Sobic006G136500--Sobic003G057900 Sobic006G136500--Sobic002G339200 Sobic006G136500--Sobic002G000500 Sobic001G078000--Sobic002G329600 Sobic006G105900 Sobic006G105900 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic009G234600--Sobic002G339200 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400
Octagon: transcription factors


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