Gene annotation
| Transcriptome id | Sobic.007G212400.2 |
|---|---|
| Synonym | Sb07g027960 |
| Functional annotation | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed |
| UniProt | A0A1Z5RB19 |
| Pfam | PF01789 |
| Panther DB | PTHR31407 PTHR31407:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding |
Orthologs (automatic annotation)
| TAIR | AT3G63540 : Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g39430.1 : thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005062 |
| Brachypodium | KQJ98897 |
| Barley | HORVU7Hr1G050340.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G212400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 2 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 3 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 4 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 5 | Sobic.002G264800 | unknown(PubMedID : 29017446)@expressed protein | - |
| 6 | Sobic.007G029300 | acyl-activating enzyme 14, putative, expressed | K14760: acyl-activating enzyme 14 |
| 7 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 8 | Sobic.001G078000 | Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed | - |
| 9 | Sobic.002G339200 | Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08914: light-harvesting complex II chlorophyll a/b binding protein 3 |
| 10 | Sobic.003G239300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 11 | Sobic.002G297300 | expressed protein | - |
| 12 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 13 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
| 14 | Sobic.002G033800 | expressed protein | - |
| 15 | Sobic.001G364100 | mTERF domain containing protein, expressed | K15032: mTERF domain-containing protein, mitochondrial |
| 16 | Sobic.009G130700 | lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed | - |
| 17 | Sobic.003G433900 | expressed protein | - |
| 18 | Sobic.003G099400 | cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 19 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 20 | Sobic.009G091850 | - | - |
Gene co-expression network
Octagon: transcription factors
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