Gene annotation
| Transcriptome id | Sobic.009G130700.1 |
|---|---|
| Synonym | Sb09g019720, TLP18.3 |
| Functional annotation | lumen 18.3kDa protein (PubMedID : 29017446) thylakoid lumen protein, putative, expressed |
| UniProt | C5YXM9 |
| Pfam | PF04536 |
| Panther DB | PTHR30373 PTHR30373:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G54780 : thylakoid lumen 18.3 kDa protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g33280.1 : thylakoid lumen protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a037025 |
| Brachypodium | KQK06353 |
| Barley | HORVU1Hr1G061890.1 , HORVU1Hr1G061830.7 , HORVU1Hr1G061830.3 , HORVU1Hr1G061830.8 |
| Wheat | TraesCS1B02G261800 , TraesCS1A02G251200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G297300 | expressed protein | - |
| 2 | Sobic.009G179800 | - | - |
| 3 | Sobic.003G433900 | expressed protein | - |
| 4 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 5 | Sobic.003G246400 | ribosomal protein L7/L12 C-terminal domain containing protein, expressed | K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12 |
| 6 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 7 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 8 | Sobic.010G022100 | magnesium-protoporphyrin O-methyltransferase, putative, expressed | K03428: bchM, magnesium-protoporphyrin O-methyltransferase |
| 9 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 10 | Sobic.002G383400 | Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed | - |
| 11 | Sobic.007G212400 | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed | - |
| 12 | Sobic.009G091850 | - | - |
| 13 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 14 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 15 | Sobic.003G239300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 16 | Sobic.002G288300 | Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 17 | Sobic.004G193400 | photosystem II 5 kDa protein, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.003G393800 | 30S ribosomal protein S31, chloroplast precursor, putative, expressed | K19033: PSRP4, 30S ribosomal protein S31 |
| 19 | Sobic.002G414400 | -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed | - |
| 20 | Sobic.001G411300 | ribosomal protein L10, putative, expressed | K02864: RP-L10, MRPL10, large subunit ribosomal protein L10 |
Gene co-expression network
Octagon: transcription factors
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