Gene annotation
Transcriptome id Sobic.003G393800.1
Synonym Sb03g043130, PSRP4
Functional annotation 30S ribosomal protein S31, chloroplast precursor, putative, expressed
UniProt C5XFH5
Pfam PF17067
Panther DB PTHR34550 PTHR34550:SF1
NCBI CDD -
KEGG Orthology K19033; PSRP4, 30S ribosomal protein S31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38140 : plastid-specific ribosomal protein 4
RAP-DB (Rice) LOC_Os05g09400.3 : 30S ribosomal protein S31, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a026370
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G393800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
2 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.009G179800 - -
5 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
6 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
7 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
8 Sobic.005G128100 acyl carrier protein, putative, expressed -
9 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
10 Sobic.004G317900 expressed protein -
11 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
12 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
13 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
14 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
15 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
16 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
17 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
18 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
19 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
20 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1


Gene co-expression network
sample Sobic003G393800 Sobic003G393800 Sobic010G233800 Sobic010G233800 Sobic003G393800--Sobic010G233800 Sobic001G076500 Sobic001G076500 Sobic003G393800--Sobic001G076500 Sobic003G246400 Sobic003G246400 Sobic003G393800--Sobic003G246400 Sobic009G179800 Sobic009G179800 Sobic003G393800--Sobic009G179800 Sobic001G427000 Sobic001G427000 Sobic003G393800--Sobic001G427000 Sobic001G453300 Sobic001G453300 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic004G317900 Sobic004G317900 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic010G233800--Sobic004G116100 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic009G179800--Sobic003G393800 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic004G335800 Sobic004G335800 Sobic004G116100--Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic001G527100 Sobic001G527100 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic003G386300 Sobic003G386300 Sobic004G116100--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic004G116100--Sobic004G311100 Sobic005G128100--Sobic003G393800 Sobic005G128100--Sobic009G179800 Sobic002G077000 Sobic002G077000 Sobic005G128100--Sobic002G077000 Sobic005G128100--Sobic001G411300 Sobic005G128100--Sobic003G256200 Sobic002G343700 Sobic002G343700 Sobic005G128100--Sobic002G343700 Sobic005G128100--Sobic003G246600 Sobic005G128100--Sobic001G427000 Sobic005G128100--Sobic003G132600 Sobic003G246600--Sobic003G393800 Sobic003G246600--Sobic009G179800 Sobic003G246600--Sobic003G246400 Sobic003G246600--Sobic010G233800 Sobic003G246600--Sobic001G411300 Sobic003G246600--Sobic001G076500 Sobic003G246600--Sobic001G427000 Sobic006G268200 Sobic006G268200 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200
Octagon: transcription factors


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