Gene annotation
Transcriptome id Sobic.003G014100.1
Synonym
Functional annotation uncharacterized protein family UPF0016 domain containing protein, expressed
UniProt A0A1B6Q0T1
Pfam PF01169
Panther DB PTHR12608 PTHR12608:SF6
NCBI CDD KOG2881; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G64150 : Uncharacterized protein family (UPF0016)
RAP-DB (Rice) LOC_Os01g12220.1 : uncharacterized protein family UPF0016 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035946
Brachypodium KQK03345
Barley HORVU5Hr1G043120.1 , HORVU5Hr1G043120.2 , HORVU3Hr1G030010.37 , HORVU3Hr1G030010.36 , HORVU3Hr1G030010.35 , HORVU3Hr1G030010.34 , HORVU3Hr1G030010.31 , HORVU3Hr1G030010.30 , HORVU3Hr1G030010.33 , HORVU3Hr1G030010.32 , HORVU3Hr1G030010.9 , HORVU3Hr1G030010.8 , HORVU3Hr1G030010.5 , HORVU3Hr1G030010.4 , HORVU3Hr1G030010.7 , HORVU3Hr1G030010.6 , HORVU3Hr1G030010.1 , HORVU3Hr1G030010.3 , HORVU3Hr1G030010.2 , HORVU3Hr1G030010.24 , HORVU3Hr1G030010.25 , HORVU3Hr1G030010.26 , HORVU3Hr1G030010.27 , HORVU3Hr1G030010.20 , HORVU3Hr1G030010.21 , HORVU3Hr1G030010.22 , HORVU3Hr1G030010.23 , HORVU3Hr1G030010.28 , HORVU3Hr1G030010.29 , HORVU3Hr1G030010.19 , HORVU3Hr1G030010.18 , HORVU3Hr1G030010.11 , HORVU3Hr1G030010.10 , HORVU3Hr1G030010.13 , HORVU3Hr1G030010.12 , HORVU3Hr1G030010.15 , HORVU3Hr1G030010.14 , HORVU3Hr1G030010.17 , HORVU3Hr1G030010.16
Wheat TraesCS3B02G174400 , TraesCS3D02G155700 , TraesCS3A02G147700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G014100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
2 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
3 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
4 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
6 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
7 Sobic.003G386300 expressed protein -
8 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
9 Sobic.010G116500 expressed protein -
10 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
11 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
12 Sobic.002G198000 CRR6, putative, expressed -
13 Sobic.002G251400 expressed protein -
14 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
15 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
16 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
17 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
18 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
20 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9


Gene co-expression network
sample Sobic003G014100 Sobic003G014100 Sobic001G391400 Sobic001G391400 Sobic003G014100--Sobic001G391400 Sobic001G527100 Sobic001G527100 Sobic003G014100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic003G014100--Sobic004G116100 Sobic004G164100 Sobic004G164100 Sobic003G014100--Sobic004G164100 Sobic004G335800 Sobic004G335800 Sobic003G014100--Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic003G014100--Sobic001G040000 Sobic003G386300 Sobic003G386300 Sobic003G014100--Sobic003G386300 Sobic003G393800 Sobic003G393800 Sobic003G014100--Sobic003G393800 Sobic010G116500 Sobic010G116500 Sobic003G014100--Sobic010G116500 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G122400 Sobic001G122400 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic001G391400--Sobic003G014100 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic002G198000 Sobic002G198000 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200 Sobic004G116100--Sobic004G335800 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic004G116100--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic004G116100--Sobic004G311100 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic004G164100--Sobic003G386300 Sobic002G251400 Sobic002G251400 Sobic004G164100--Sobic002G251400 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic010G095200 Sobic010G095200 Sobic004G164100--Sobic010G095200 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic010G233800 Sobic010G233800 Sobic003G393800--Sobic010G233800 Sobic001G076500 Sobic001G076500 Sobic003G393800--Sobic001G076500 Sobic003G246400 Sobic003G246400 Sobic003G393800--Sobic003G246400 Sobic009G179800 Sobic009G179800 Sobic003G393800--Sobic009G179800 Sobic001G427000 Sobic001G427000 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic010G116500--Sobic003G328200 Sobic010G116500--Sobic001G240000 Sobic010G022100 Sobic010G022100 Sobic010G116500--Sobic010G022100 Sobic010G116500--Sobic001G527100 Sobic010G116500--Sobic003G014100 Sobic006G248200 Sobic006G248200 Sobic010G116500--Sobic006G248200 Sobic010G116500--Sobic003G386300 Sobic002G198600 Sobic002G198600 Sobic010G116500--Sobic002G198600 Sobic001G411300 Sobic001G411300 Sobic010G116500--Sobic001G411300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.