Gene annotation
Transcriptome id Sobic.002G251400.1
Synonym Sb02g028720
Functional annotation expressed protein
UniProt C5X4I8
Pfam PF02410
Panther DB PTHR21043 PTHR21043:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12930 : Lojap-related protein
RAP-DB (Rice) LOC_Os09g32030.1 : expressed protein
MaizeGDB (Corn) Zm00025a047487
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G251400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
2 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
4 Sobic.003G386300 expressed protein -
5 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
6 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
7 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
8 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
9 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
10 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
11 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
12 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
13 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
14 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
15 Sobic.002G198000 CRR6, putative, expressed -
16 Sobic.005G110481 - -
17 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
18 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
19 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
20 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic002G251400 Sobic002G251400 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic002G198000 Sobic002G198000 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic004G164100--Sobic003G386300 Sobic004G164100--Sobic002G251400 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic010G095200 Sobic010G095200 Sobic004G164100--Sobic010G095200 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500
Octagon: transcription factors


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