Gene annotation
Transcriptome id Sobic.009G001500.1
Synonym ATCYP20-2, CYP20-2, Sb09g000350
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5YXY3
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF11
NCBI CDD KOG0880; Peptidyl-prolyl cis-trans isomerase
KEGG Orthology K03768; PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT5G13120 : cyclophilin 20-2
RAP-DB (Rice) LOC_Os05g01270.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a041011 , Zm00025a038297
Brachypodium KQK08145
Barley HORVU1Hr1G000710.3 , HORVU1Hr1G000710.2 , HORVU1Hr1G000710.1 , HORVU1Hr1G000710.4
Wheat TraesCS1D02G000800 , TraesCS1D02G000800 , TraesCS1A02G007500 , TraesCS1B02G011100
Populus -


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cDNA sequences
Sobic.009G001500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
2 Sobic.003G383500 rhodanese-like, putative, expressed -
3 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
5 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
6 Sobic.003G383600 - -
7 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
8 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
9 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
12 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
13 Sobic.002G251400 expressed protein -
14 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
16 Sobic.005G110481 - -
17 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
19 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
20 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase


Gene co-expression network
sample Sobic009G001500 Sobic009G001500 Sobic007G013400 Sobic007G013400 Sobic009G001500--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic009G001500--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic001G383900 Sobic001G383900 Sobic009G001500--Sobic001G383900 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic002G251400 Sobic002G251400 Sobic007G013400--Sobic002G251400 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100 Sobic003G383500--Sobic007G013400 Sobic003G383500--Sobic009G001500 Sobic003G383500--Sobic003G295800 Sobic003G383500--Sobic007G211100 Sobic003G383500--Sobic003G261200 Sobic003G383500--Sobic004G044000 Sobic003G383500--Sobic003G383600 Sobic005G110481 Sobic005G110481 Sobic003G383500--Sobic005G110481 Sobic004G109000 Sobic004G109000 Sobic003G383500--Sobic004G109000 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic004G044200--Sobic009G001500 Sobic004G044200--Sobic007G013400 Sobic004G044200--Sobic003G295800 Sobic001G541300 Sobic001G541300 Sobic004G044200--Sobic001G541300 Sobic007G185100 Sobic007G185100 Sobic004G044200--Sobic007G185100 Sobic003G328200 Sobic003G328200 Sobic004G044200--Sobic003G328200 Sobic005G218600 Sobic005G218600 Sobic004G044200--Sobic005G218600 Sobic005G218201 Sobic005G218201 Sobic004G044200--Sobic005G218201 Sobic003G386300 Sobic003G386300 Sobic004G044200--Sobic003G386300 Sobic004G044000--Sobic001G027600 Sobic004G044000--Sobic001G383900 Sobic006G280050 Sobic006G280050 Sobic004G044000--Sobic006G280050 Sobic004G044000--Sobic009G001500 Sobic003G030900 Sobic003G030900 Sobic004G044000--Sobic003G030900 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic001G076500 Sobic001G076500 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500 Sobic003G383600--Sobic003G295800 Sobic003G383600--Sobic007G013400 Sobic008G123600 Sobic008G123600 Sobic003G383600--Sobic008G123600 Sobic001G069500 Sobic001G069500 Sobic003G383600--Sobic001G069500 Sobic003G383600--Sobic009G001500 Sobic003G383600--Sobic008G030000 Sobic003G383600--Sobic009G098100 Sobic010G215500 Sobic010G215500 Sobic003G383600--Sobic010G215500 Sobic003G383600--Sobic003G383500 Sobic007G211100--Sobic001G069500 Sobic007G211100--Sobic007G013400 Sobic007G211100--Sobic003G383500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic001G188600 Sobic001G188600 Sobic007G211100--Sobic001G188600 Sobic007G211100--Sobic003G295800 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100 Sobic008G030000--Sobic003G295800 Sobic008G030000--Sobic009G098100 Sobic008G030000--Sobic009G001500 Sobic008G030000--Sobic003G383600 Sobic008G030000--Sobic001G453300 Sobic001G357200 Sobic001G357200 Sobic008G030000--Sobic001G357200 Sobic008G030000--Sobic007G185100 Sobic008G030000--Sobic001G383900 Sobic008G030000--Sobic007G013400 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500
Octagon: transcription factors


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