Gene annotation
Transcriptome id Sobic.010G011200.1
Synonym CPN60B, LEN1, Sb10g001120
Functional annotation T-complex protein, putative, expressed
UniProt C5Z2S4
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF8
NCBI CDD -
KEGG Orthology K04077; groEL, chaperonin GroEL
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G55490 : chaperonin 60 beta
RAP-DB (Rice) LOC_Os06g02380.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a035093 , Zm00025a041190 , Zm00025a050256
Brachypodium KQJ92757 , KQJ92756 , KQK19757 , KQK19756
Barley HORVU6Hr1G000180.18 , HORVU6Hr1G000180.15 , HORVU6Hr1G000180.14 , HORVU6Hr1G000180.16 , HORVU6Hr1G000180.11 , HORVU6Hr1G000180.10 , HORVU6Hr1G000180.13 , HORVU6Hr1G000180.12 , HORVU7Hr1G006490.8 , HORVU7Hr1G006490.9 , HORVU7Hr1G006490.1 , HORVU7Hr1G006490.2 , HORVU7Hr1G006490.3 , HORVU7Hr1G006490.4 , HORVU7Hr1G006490.5 , HORVU7Hr1G006490.6 , HORVU7Hr1G006490.7 , HORVU2Hr1G107410.1 , HORVU5Hr1G074160.1 , HORVU6Hr1G000180.6 , HORVU6Hr1G000180.9 , HORVU6Hr1G000180.8 , HORVU6Hr1G000180.1 , HORVU6Hr1G000180.3 , HORVU6Hr1G000180.2 , HORVU6Hr1G000180.5 , HORVU6Hr1G000180.4 , HORVU6Hr1G000180.7 , HORVU2Hr1G107410.2 , HORVU7Hr1G006490.12 , HORVU7Hr1G006490.10 , HORVU7Hr1G006490.11 , HORVU1Hr1G049770.2 , HORVU1Hr1G049770.1
Wheat TraesCS7A02G036200 , TraesCS7A02G036200 , TraesCS6B02G012100 , TraesCS6B02G012100 , TraesCS6B02G012100 , TraesCS7D02G032800 , TraesCS7D02G032800 , TraesCS6D02G009100 , TraesCS6A02G006400 , TraesCS4A02G452700 , TraesCS4A02G452700 , TraesCS4A02G452700 , TraesCS6B02G012000 , TraesCS6B02G011800
Populus PNT51922 , PNT46938 , PNT46939 , PNT51923


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cDNA sequences
Sobic.010G011200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110481 - -
2 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
4 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
5 Sobic.002G013700 PPR2, putative, expressed -
6 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
9 Sobic.009G098100 T-complex protein, putative, expressed -
10 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
11 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
12 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
13 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
14 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.003G383500 rhodanese-like, putative, expressed -
16 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
17 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
18 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
19 Sobic.002G251400 expressed protein -
20 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13


Gene co-expression network
sample Sobic010G011200 Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic002G013700 Sobic002G013700 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic009G104700 Sobic009G104700 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G188600 Sobic001G188600 Sobic010G012900--Sobic001G188600 Sobic001G357200 Sobic001G357200 Sobic010G012900--Sobic001G357200 Sobic010G012900--Sobic010G011200 Sobic010G012900--Sobic001G383900 Sobic001G172300 Sobic001G172300 Sobic010G012900--Sobic001G172300 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic006G114300 Sobic006G114300 Sobic010G012900--Sobic006G114300 Sobic010G012900--Sobic009G098100 Sobic001G148200--Sobic005G110481 Sobic003G444500 Sobic003G444500 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic001G148200--Sobic009G001500 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic002G013700--Sobic010G011200 Sobic002G013700--Sobic007G101300 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic002G013700--Sobic001G148200 Sobic002G013700--Sobic009G042200 Sobic009G001500--Sobic007G013400 Sobic009G001500--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic009G001500--Sobic003G295800 Sobic004G044200 Sobic004G044200 Sobic009G001500--Sobic004G044200 Sobic004G044000 Sobic004G044000 Sobic009G001500--Sobic004G044000 Sobic003G383600 Sobic003G383600 Sobic009G001500--Sobic003G383600 Sobic007G211100 Sobic007G211100 Sobic009G001500--Sobic007G211100 Sobic008G030000 Sobic008G030000 Sobic009G001500--Sobic008G030000 Sobic009G001500--Sobic001G383900 Sobic001G453300 Sobic001G453300 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G076500 Sobic001G076500 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic005G184300 Sobic005G184300 Sobic009G104700--Sobic005G184300 Sobic009G104700--Sobic003G444500 Sobic003G128400 Sobic003G128400 Sobic009G104700--Sobic003G128400 Sobic003G373300 Sobic003G373300 Sobic009G104700--Sobic003G373300 Sobic001G069500 Sobic001G069500 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100
Octagon: transcription factors


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