Gene annotation
Transcriptome id Sobic.009G042200.1,Sobic.009G042200.2
Synonym Sb09g003540, DEGP2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsDegp6 - Putative Deg protease homologue, expressed
UniProt C5Z012 , A0A1B6P6I6
Pfam PF13180 PF13365
Panther DB PTHR22939 PTHR22939:SF83
NCBI CDD KOG1320; Serine protease
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G47940 : DEGP protease 2
RAP-DB (Rice) LOC_Os05g05480.1 : OsDegp6 - Putative Deg protease homologue, expressed
MaizeGDB (Corn) Zm00025a055393
Brachypodium KQK07540
Barley HORVU1Hr1G020000.19 , HORVU1Hr1G020000.5 , HORVU1Hr1G020000.4 , HORVU1Hr1G020000.7 , HORVU1Hr1G020000.6 , HORVU1Hr1G020000.1 , HORVU1Hr1G020000.3 , HORVU1Hr1G020000.2 , HORVU1Hr1G020000.9 , HORVU1Hr1G020000.8 , HORVU1Hr1G020000.11 , HORVU1Hr1G020000.10 , HORVU1Hr1G020000.13 , HORVU1Hr1G020000.12 , HORVU1Hr1G020000.15 , HORVU1Hr1G020000.14 , HORVU1Hr1G020000.17 , HORVU1Hr1G020000.16 , HORVU1Hr1G020000.18
Wheat TraesCS1D02G092200 , TraesCS1A02G100600 , TraesCS1B02G110400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110481 - -
2 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
4 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
5 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
6 Sobic.002G251400 expressed protein -
7 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
8 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
9 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.002G013700 PPR2, putative, expressed -
11 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.003G324700 expressed protein -
13 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
14 Sobic.004G179200 expressed protein -
15 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
16 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
17 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
18 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
19 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
20 Sobic.003G373300 DNA polymerase I, putative, expressed -


Gene co-expression network
sample Sobic009G042200 Sobic009G042200 Sobic005G110481 Sobic005G110481 Sobic009G042200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic009G042200--Sobic007G171800 Sobic001G148200 Sobic001G148200 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic001G391400 Sobic001G391400 Sobic009G042200--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic009G042200--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic009G042200--Sobic004G335800 Sobic003G444500 Sobic003G444500 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G148200--Sobic005G110481 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic009G001500 Sobic009G001500 Sobic001G148200--Sobic009G001500 Sobic007G155600--Sobic009G042200 Sobic007G155600--Sobic007G171800 Sobic007G155600--Sobic005G110481 Sobic007G155600--Sobic002G297400 Sobic007G155600--Sobic001G148200 Sobic006G166000 Sobic006G166000 Sobic007G155600--Sobic006G166000 Sobic007G155600--Sobic002G013700 Sobic002G158800 Sobic002G158800 Sobic007G155600--Sobic002G158800 Sobic007G155600--Sobic007G101300 Sobic001G040000 Sobic001G040000 Sobic001G391400--Sobic001G040000 Sobic001G527100 Sobic001G527100 Sobic001G391400--Sobic001G527100 Sobic001G122400 Sobic001G122400 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic004G116100 Sobic004G116100 Sobic001G391400--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G444500--Sobic001G148200 Sobic003G330100 Sobic003G330100 Sobic003G444500--Sobic003G330100 Sobic004G179200 Sobic004G179200 Sobic003G444500--Sobic004G179200 Sobic003G444500--Sobic002G251400 Sobic003G444500--Sobic009G042200 Sobic003G221700 Sobic003G221700 Sobic003G444500--Sobic003G221700 Sobic003G084500 Sobic003G084500 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic002G297400--Sobic004G179200 Sobic006G055800 Sobic006G055800 Sobic002G297400--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic002G297400--Sobic001G122400 Sobic005G184300 Sobic005G184300 Sobic002G297400--Sobic005G184300 Sobic002G297400--Sobic003G324700 Sobic003G439000 Sobic003G439000 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600
Octagon: transcription factors


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