Gene annotation
Transcriptome id Sobic.001G469933.1
Synonym -
Functional annotation -
UniProt A0A1Z5SB71
Pfam PF00338
Panther DB PTHR11700 PTHR11700:SF9
NCBI CDD KOG0900; 40S ribosomal protein S20
KEGG Orthology K02946; RP-S10, MRPS10, small subunit ribosomal protein S10
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G13120 : Ribosomal protein S10p/S20e family protein
RAP-DB (Rice) LOC_Os03g10060.1 : S10/S20 domain containing ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a001215
Brachypodium -
Barley -
Wheat TraesCS4B02G263100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
2 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
3 Sobic.003G324700 expressed protein -
4 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
5 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
6 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
7 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
8 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
9 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
10 Sobic.002G198000 CRR6, putative, expressed -
11 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
12 Sobic.002G152800 RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G386300 expressed protein -
14 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
15 Sobic.004G179200 expressed protein -
16 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
18 Sobic.003G439000 rubredoxin family protein, putative, expressed -
19 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)


Gene co-expression network
sample Sobic001G469933 Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G469933--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic001G469933--Sobic001G368500 Sobic003G324700 Sobic003G324700 Sobic001G469933--Sobic003G324700 Sobic003G077400 Sobic003G077400 Sobic001G469933--Sobic003G077400 Sobic006G055800 Sobic006G055800 Sobic001G469933--Sobic006G055800 Sobic003G432500 Sobic003G432500 Sobic001G469933--Sobic003G432500 Sobic004G335800 Sobic004G335800 Sobic001G469933--Sobic004G335800 Sobic001G083100 Sobic001G083100 Sobic001G469933--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic001G469933--Sobic005G110400 Sobic003G386300 Sobic003G386300 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G368500--Sobic001G469933 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic005G143500 Sobic005G143500 Sobic001G368500--Sobic005G143500 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G324700--Sobic003G386300 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic003G077400--Sobic001G469933 Sobic003G077400--Sobic008G073100 Sobic003G077400--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G077400--Sobic004G012900 Sobic003G077400--Sobic001G368500 Sobic003G077400--Sobic002G401800 Sobic003G387100 Sobic003G387100 Sobic003G077400--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic003G077400--Sobic003G160800 Sobic004G336200 Sobic004G336200 Sobic003G077400--Sobic004G336200 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic001G040000 Sobic001G040000 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic008G039600 Sobic008G039600 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic003G372900 Sobic003G372900 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic001G083100--Sobic008G073100 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic005G110400--Sobic003G432500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.