Gene annotation
Transcriptome id Sobic.001G368500.1
Synonym Sb01g035090, emb2394
Functional annotation ribosomal protein L6, putative, expressed
UniProt C5WZQ4
Pfam PF00347
Panther DB PTHR11655 PTHR11655:SF14
NCBI CDD KOG3254; Mitochondrial/chloroplast ribosomal protein L6
KEGG Orthology K02933; RP-L6, MRPL6, large subunit ribosomal protein L6
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G05190 : Ribosomal protein L6 family
RAP-DB (Rice) LOC_Os03g24020.1 : ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a002517 , Zm00025a052352
Brachypodium KQK21650
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G368500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G324700 expressed protein -
2 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
3 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
4 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
5 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
6 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
7 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
8 Sobic.003G271900 expressed protein -
9 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
10 Sobic.002G272100 expressed protein -
11 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
12 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
13 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
14 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
15 Sobic.006G021600 uncharacterized membrane protein, putative, expressed -
16 Sobic.001G291900 expressed protein -
17 Sobic.004G012900 expressed protein -
18 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
19 Sobic.003G386300 expressed protein -
20 Sobic.002G152800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G368500 Sobic001G368500 Sobic003G324700 Sobic003G324700 Sobic001G368500--Sobic003G324700 Sobic005G110400 Sobic005G110400 Sobic001G368500--Sobic005G110400 Sobic003G432500 Sobic003G432500 Sobic001G368500--Sobic003G432500 Sobic001G469933 Sobic001G469933 Sobic001G368500--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic005G143500 Sobic005G143500 Sobic001G368500--Sobic005G143500 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic004G335800 Sobic004G335800 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G324700--Sobic003G432500 Sobic001G527100 Sobic001G527100 Sobic003G324700--Sobic001G527100 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic004G336200 Sobic004G336200 Sobic005G110400--Sobic004G336200 Sobic003G387100 Sobic003G387100 Sobic005G110400--Sobic003G387100 Sobic005G110400--Sobic005G143500 Sobic003G077400 Sobic003G077400 Sobic005G110400--Sobic003G077400 Sobic005G110400--Sobic003G432500 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic001G469933--Sobic001G122400 Sobic001G469933--Sobic001G368500 Sobic001G469933--Sobic003G324700 Sobic001G469933--Sobic003G077400 Sobic001G469933--Sobic006G055800 Sobic001G469933--Sobic003G432500 Sobic001G469933--Sobic004G335800 Sobic001G083100 Sobic001G083100 Sobic001G469933--Sobic001G083100 Sobic001G469933--Sobic005G110400 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic002G401800--Sobic003G077400 Sobic003G271900--Sobic001G368500 Sobic003G271900--Sobic003G432500 Sobic003G271900--Sobic002G272100 Sobic003G271900--Sobic005G143500 Sobic003G271900--Sobic003G324700 Sobic003G271900--Sobic006G055800 Sobic008G039600 Sobic008G039600 Sobic003G271900--Sobic008G039600 Sobic003G271900--Sobic005G110400 Sobic003G271900--Sobic006G106400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic005G143500--Sobic003G324700
Octagon: transcription factors


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