Gene annotation
Transcriptome id Sobic.003G271900.3
Synonym PDE225, PTAC7, Sb03g032400
Functional annotation expressed protein
UniProt A0A1B6Q5M7
Pfam -
Panther DB PTHR37257 PTHR37257:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24314 : plastid transcriptionally active7
RAP-DB (Rice) LOC_Os01g50930.1 : expressed protein
MaizeGDB (Corn) Zm00025a027848 , Zm00025a038923
Brachypodium KQK09394 , KQK09395
Barley HORVU3Hr1G066380.6 , HORVU3Hr1G066380.7 , HORVU3Hr1G066380.4 , HORVU3Hr1G066380.2 , HORVU3Hr1G066380.3 , HORVU3Hr1G066380.1 , HORVU3Hr1G066380.8 , HORVU3Hr1G066380.9 , HORVU3Hr1G066380.14 , HORVU3Hr1G066380.10 , HORVU3Hr1G066380.11 , HORVU3Hr1G066380.12 , HORVU3Hr1G066380.13
Wheat TraesCS3A02G253000 , TraesCS3A02G253000 , TraesCS3A02G253000 , TraesCS3B02G284900 , TraesCS3B02G284900 , TraesCS3B02G284900 , TraesCS3B02G284900 , TraesCS3D02G253900 , TraesCS3D02G253900 , TraesCS3D02G253900 , TraesCS3D02G253900 , TraesCS3D02G253900
Populus -


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cDNA sequences
Sobic.003G271900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
2 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
3 Sobic.002G272100 expressed protein -
4 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
5 Sobic.003G324700 expressed protein -
6 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
7 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
9 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
10 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
11 Sobic.006G021600 uncharacterized membrane protein, putative, expressed -
12 Sobic.007G090400 expressed protein -
13 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
14 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
15 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
16 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
17 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
18 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
19 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
20 Sobic.004G065300 CR084 protein, putative, expressed -


Gene co-expression network
sample Sobic003G271900 Sobic003G271900 Sobic001G368500 Sobic001G368500 Sobic003G271900--Sobic001G368500 Sobic003G432500 Sobic003G432500 Sobic003G271900--Sobic003G432500 Sobic002G272100 Sobic002G272100 Sobic003G271900--Sobic002G272100 Sobic005G143500 Sobic005G143500 Sobic003G271900--Sobic005G143500 Sobic003G324700 Sobic003G324700 Sobic003G271900--Sobic003G324700 Sobic006G055800 Sobic006G055800 Sobic003G271900--Sobic006G055800 Sobic008G039600 Sobic008G039600 Sobic003G271900--Sobic008G039600 Sobic005G110400 Sobic005G110400 Sobic003G271900--Sobic005G110400 Sobic006G106400 Sobic006G106400 Sobic003G271900--Sobic006G106400 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G469933 Sobic001G469933 Sobic001G368500--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G368500--Sobic001G122400 Sobic008G073100 Sobic008G073100 Sobic001G368500--Sobic008G073100 Sobic002G401800 Sobic002G401800 Sobic001G368500--Sobic002G401800 Sobic001G368500--Sobic003G271900 Sobic001G368500--Sobic005G143500 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic002G152800 Sobic002G152800 Sobic003G432500--Sobic002G152800 Sobic002G272100--Sobic002G401800 Sobic002G272100--Sobic008G073100 Sobic002G272100--Sobic001G368500 Sobic008G050400 Sobic008G050400 Sobic002G272100--Sobic008G050400 Sobic002G272100--Sobic008G039600 Sobic002G351600 Sobic002G351600 Sobic002G272100--Sobic002G351600 Sobic002G267900 Sobic002G267900 Sobic002G272100--Sobic002G267900 Sobic001G083100 Sobic001G083100 Sobic002G272100--Sobic001G083100 Sobic002G272100--Sobic005G110400 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic005G143500--Sobic003G324700 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic004G335800 Sobic004G335800 Sobic003G324700--Sobic004G335800 Sobic003G324700--Sobic006G055800 Sobic003G324700--Sobic002G152800 Sobic003G386300 Sobic003G386300 Sobic003G324700--Sobic003G386300 Sobic003G324700--Sobic003G432500 Sobic001G527100 Sobic001G527100 Sobic003G324700--Sobic001G527100 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic004G336200 Sobic004G336200 Sobic005G110400--Sobic004G336200 Sobic003G387100 Sobic003G387100 Sobic005G110400--Sobic003G387100 Sobic005G110400--Sobic005G143500 Sobic003G077400 Sobic003G077400 Sobic005G110400--Sobic003G077400 Sobic005G110400--Sobic003G432500 Sobic004G011300 Sobic004G011300 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic006G106400--Sobic001G368500 Sobic006G106400--Sobic005G143500 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100
Octagon: transcription factors


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