Gene annotation
Transcriptome id Sobic.004G011300.1
Synonym Sb04g001123
Functional annotation S1 RNA binding domain containing protein, expressed
UniProt C5XSA3
Pfam PF00575
Panther DB PTHR23270 PTHR23270:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G12800 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os02g02390.1 : S1 RNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018702
Brachypodium PNT65724 , PNT65725
Barley HORVU6Hr1G008590.2 , HORVU6Hr1G008590.8 , HORVU6Hr1G008590.9 , HORVU6Hr1G008590.6 , HORVU6Hr1G008590.7 , HORVU6Hr1G008590.4 , HORVU6Hr1G008590.5 , HORVU6Hr1G008590.3 , HORVU6Hr1G008590.1 , HORVU6Hr1G008590.14 , HORVU6Hr1G008590.15 , HORVU6Hr1G008590.16 , HORVU6Hr1G008590.17 , HORVU6Hr1G008590.10 , HORVU6Hr1G008590.11 , HORVU6Hr1G008590.12 , HORVU6Hr1G008590.13 , HORVU6Hr1G008590.18 , HORVU6Hr1G008590.19 , HORVU6Hr1G008590.20
Wheat TraesCS6A02G041000 , TraesCS6D02G047400 , TraesCS6B02G056100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
2 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
3 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
4 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
7 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
9 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
11 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
12 Sobic.003G271900 expressed protein -
13 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
14 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
15 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
16 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
17 Sobic.001G516901 - -
18 Sobic.001G309300 expressed protein -
19 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
20 Sobic.006G197300 expressed protein -


Gene co-expression network
sample Sobic004G011300 Sobic004G011300 Sobic006G106400 Sobic006G106400 Sobic004G011300--Sobic006G106400 Sobic009G148500 Sobic009G148500 Sobic004G011300--Sobic009G148500 Sobic001G495200 Sobic001G495200 Sobic004G011300--Sobic001G495200 Sobic004G336000 Sobic004G336000 Sobic004G011300--Sobic004G336000 Sobic002G181000 Sobic002G181000 Sobic004G011300--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic004G011300--Sobic002G043600 Sobic008G039600 Sobic008G039600 Sobic004G011300--Sobic008G039600 Sobic008G073100 Sobic008G073100 Sobic004G011300--Sobic008G073100 Sobic003G301300 Sobic003G301300 Sobic004G011300--Sobic003G301300 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic001G368500 Sobic001G368500 Sobic006G106400--Sobic001G368500 Sobic005G143500 Sobic005G143500 Sobic006G106400--Sobic005G143500 Sobic002G401800 Sobic002G401800 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic006G106400--Sobic009G148500 Sobic002G272100 Sobic002G272100 Sobic006G106400--Sobic002G272100 Sobic001G083100 Sobic001G083100 Sobic009G148500--Sobic001G083100 Sobic003G151500 Sobic003G151500 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic006G055800 Sobic006G055800 Sobic009G148500--Sobic006G055800 Sobic001G126300 Sobic001G126300 Sobic009G148500--Sobic001G126300 Sobic009G148500--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic009G148500--Sobic005G002900 Sobic005G110400 Sobic005G110400 Sobic009G148500--Sobic005G110400 Sobic001G500600 Sobic001G500600 Sobic009G148500--Sobic001G500600 Sobic001G495200--Sobic001G126300 Sobic003G232700 Sobic003G232700 Sobic001G495200--Sobic003G232700 Sobic001G495200--Sobic004G336000 Sobic001G495200--Sobic004G011300 Sobic001G495200--Sobic005G143500 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic001G495200--Sobic005G110400 Sobic001G495200--Sobic002G043600 Sobic001G309300 Sobic001G309300 Sobic004G336000--Sobic001G309300 Sobic004G336000--Sobic001G495200 Sobic004G336000--Sobic008G073100 Sobic001G291900 Sobic001G291900 Sobic004G336000--Sobic001G291900 Sobic003G432500 Sobic003G432500 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G336000--Sobic004G011300 Sobic003G085000 Sobic003G085000 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic002G043600--Sobic004G011300 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic008G039600--Sobic005G143500 Sobic008G039600--Sobic001G083100 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic004G336200 Sobic004G336200 Sobic008G073100--Sobic004G336200 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic008G073100--Sobic002G272100 Sobic008G073100--Sobic006G106400 Sobic003G301300--Sobic008G073100 Sobic003G301300--Sobic001G500600 Sobic003G301300--Sobic004G336200 Sobic010G035400 Sobic010G035400 Sobic003G301300--Sobic010G035400 Sobic003G160800 Sobic003G160800 Sobic003G301300--Sobic003G160800 Sobic003G301300--Sobic005G110400 Sobic002G406700 Sobic002G406700 Sobic003G301300--Sobic002G406700 Sobic003G301300--Sobic003G232700 Sobic003G301300--Sobic001G126300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.