Gene annotation
Transcriptome id Sobic.001G126300.1
Synonym Sb01g011080, ADSS
Functional annotation adenylosuccinate synthetase, chloroplast precursor, putative, expressed
UniProt C5WNV2
Pfam PF00709
Panther DB PTHR11846 PTHR11846:SF4
NCBI CDD -
KEGG Orthology K01939; purA, adenylosuccinate synthase
Gene Ontology GO:0006164; purine nucleotide biosynthetic process GO:0005525GTP binding GO:0004019adenylosuccinate synthase activity


Orthologs (automatic annotation)
TAIR AT3G57610 : adenylosuccinate synthase
RAP-DB (Rice) LOC_Os03g49220.1 : adenylosuccinate synthetase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a007718
Brachypodium KQK13667
Barley HORVU4Hr1G005910.4 , HORVU4Hr1G005910.3 , HORVU4Hr1G005910.2 , HORVU4Hr1G005910.1
Wheat TraesCS4A02G276300 , TraesCS4D02G289300 , TraesCS4D02G289300 , TraesCS4B02G037400 , TraesCS4A02G013500 , TraesCS4A02G013500 , TraesCS4D02G034700 , TraesCS4D02G034800
Populus PNS98635


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cDNA sequences
Sobic.001G126300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
2 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
3 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
4 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
6 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
7 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
8 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.001G283700 acyltransferase, putative, expressed K00630: glycerol-3-phosphate O-acyltransferase
12 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
13 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
14 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
15 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
16 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
17 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
18 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
19 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic001G126300 Sobic001G126300 Sobic005G110400 Sobic005G110400 Sobic001G126300--Sobic005G110400 Sobic008G073100 Sobic008G073100 Sobic001G126300--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic001G126300--Sobic001G495200 Sobic003G160800 Sobic003G160800 Sobic001G126300--Sobic003G160800 Sobic009G148500 Sobic009G148500 Sobic001G126300--Sobic009G148500 Sobic003G387100 Sobic003G387100 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic004G336200 Sobic004G336200 Sobic001G126300--Sobic004G336200 Sobic003G301300 Sobic003G301300 Sobic001G126300--Sobic003G301300 Sobic005G110400--Sobic008G073100 Sobic001G368500 Sobic001G368500 Sobic005G110400--Sobic001G368500 Sobic005G110400--Sobic001G126300 Sobic002G401800 Sobic002G401800 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic003G077400 Sobic003G077400 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic001G495200--Sobic001G126300 Sobic003G232700 Sobic003G232700 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic004G011300 Sobic004G011300 Sobic001G495200--Sobic004G011300 Sobic001G495200--Sobic005G143500 Sobic001G495200--Sobic006G106400 Sobic002G181000 Sobic002G181000 Sobic001G495200--Sobic002G181000 Sobic001G495200--Sobic005G110400 Sobic002G043600 Sobic002G043600 Sobic001G495200--Sobic002G043600 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic003G160800--Sobic009G175500 Sobic001G083100 Sobic001G083100 Sobic009G148500--Sobic001G083100 Sobic003G151500 Sobic003G151500 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic006G055800 Sobic006G055800 Sobic009G148500--Sobic006G055800 Sobic009G148500--Sobic001G126300 Sobic009G148500--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic009G148500--Sobic005G002900 Sobic009G148500--Sobic005G110400 Sobic001G500600 Sobic001G500600 Sobic009G148500--Sobic001G500600 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic001G005200 Sobic001G005200 Sobic009G175500--Sobic001G005200 Sobic009G175500--Sobic004G336200 Sobic001G128600 Sobic001G128600 Sobic009G175500--Sobic001G128600 Sobic009G175500--Sobic003G160800 Sobic009G175500--Sobic003G387100 Sobic009G175500--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic009G175500--Sobic001G283700 Sobic009G175500--Sobic001G126300 Sobic009G175500--Sobic010G035400 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic003G301300--Sobic008G073100 Sobic003G301300--Sobic001G500600 Sobic003G301300--Sobic004G336200 Sobic003G301300--Sobic010G035400 Sobic003G301300--Sobic003G160800 Sobic003G301300--Sobic005G110400 Sobic002G406700 Sobic002G406700 Sobic003G301300--Sobic002G406700 Sobic003G301300--Sobic003G232700 Sobic003G301300--Sobic001G126300
Octagon: transcription factors


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