Gene annotation
Transcriptome id Sobic.003G151500.1
Synonym ATCAF2, CAF2, Sb03g013160
Functional annotation CRS2-associated factor 2, chloroplast precursor, putative, expressed
UniProt A0A120GUV0 , A0A1B6Q3A3
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G23400 : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
RAP-DB (Rice) LOC_Os01g21990.1 : CRS2-associated factor 2, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a024378
Brachypodium KQK04181
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G151500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
2 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
3 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
4 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
6 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
7 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
8 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
9 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
10 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
11 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
12 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
13 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
14 Sobic.002G272100 expressed protein -
15 Sobic.003G085100 MYB family transcription factor, putative, expressed -
16 Sobic.006G132000 glycine-rich protein, putative, expressed -
17 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
18 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic003G151500 Sobic003G151500 Sobic009G148500 Sobic009G148500 Sobic003G151500--Sobic009G148500 Sobic002G406700 Sobic002G406700 Sobic003G151500--Sobic002G406700 Sobic003G432500 Sobic003G432500 Sobic003G151500--Sobic003G432500 Sobic004G336200 Sobic004G336200 Sobic003G151500--Sobic004G336200 Sobic001G126300 Sobic001G126300 Sobic003G151500--Sobic001G126300 Sobic005G110400 Sobic005G110400 Sobic003G151500--Sobic005G110400 Sobic001G083100 Sobic001G083100 Sobic003G151500--Sobic001G083100 Sobic003G372900 Sobic003G372900 Sobic003G151500--Sobic003G372900 Sobic008G073100 Sobic008G073100 Sobic003G151500--Sobic008G073100 Sobic009G148500--Sobic001G083100 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic006G055800 Sobic006G055800 Sobic009G148500--Sobic006G055800 Sobic009G148500--Sobic001G126300 Sobic004G011300 Sobic004G011300 Sobic009G148500--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic009G148500--Sobic005G002900 Sobic009G148500--Sobic005G110400 Sobic001G500600 Sobic001G500600 Sobic009G148500--Sobic001G500600 Sobic002G406700--Sobic004G336200 Sobic002G406700--Sobic008G073100 Sobic002G406700--Sobic003G151500 Sobic002G406700--Sobic003G372900 Sobic002G272100 Sobic002G272100 Sobic002G406700--Sobic002G272100 Sobic003G094350 Sobic003G094350 Sobic002G406700--Sobic003G094350 Sobic003G301300 Sobic003G301300 Sobic002G406700--Sobic003G301300 Sobic002G406700--Sobic009G148500 Sobic003G077400 Sobic003G077400 Sobic002G406700--Sobic003G077400 Sobic001G368500 Sobic001G368500 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic001G469933 Sobic001G469933 Sobic003G432500--Sobic001G469933 Sobic003G271900 Sobic003G271900 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G324700 Sobic003G324700 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic002G152800 Sobic002G152800 Sobic003G432500--Sobic002G152800 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic001G126300--Sobic005G110400 Sobic001G126300--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic001G126300--Sobic001G495200 Sobic001G126300--Sobic003G160800 Sobic001G126300--Sobic009G148500 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic001G126300--Sobic003G301300 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic005G110400--Sobic003G432500 Sobic001G083100--Sobic005G002900 Sobic001G083100--Sobic009G148500 Sobic008G039600 Sobic008G039600 Sobic001G083100--Sobic008G039600 Sobic001G083100--Sobic001G469933 Sobic001G083100--Sobic006G055800 Sobic001G083100--Sobic002G272100 Sobic001G083100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic001G083100--Sobic001G054100 Sobic001G083100--Sobic008G073100 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic003G372900--Sobic001G083100 Sobic003G372900--Sobic002G406700 Sobic003G141100 Sobic003G141100 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic008G073100--Sobic003G077400 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.