Gene annotation
Transcriptome id Sobic.001G134700.1
Synonym Sb01g011770
Functional annotation 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5WPK4
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF109
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G32550 : 2Fe-2S ferredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os03g48040.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017097
Brachypodium -
Barley HORVU4Hr1G004210.20 , HORVU4Hr1G004210.19 , HORVU4Hr1G004210.18 , HORVU4Hr1G004210.13 , HORVU4Hr1G004210.12 , HORVU4Hr1G004210.11 , HORVU4Hr1G004210.10 , HORVU4Hr1G004210.17 , HORVU4Hr1G004210.16 , HORVU4Hr1G004210.15 , HORVU4Hr1G004210.14 , HORVU4Hr1G004210.8 , HORVU4Hr1G004210.9 , HORVU4Hr1G004210.3 , HORVU4Hr1G004210.2 , HORVU4Hr1G004210.1 , HORVU4Hr1G004210.7 , HORVU4Hr1G004210.5 , HORVU4Hr1G004210.4
Wheat TraesCS4D02G025700 , TraesCS4A02G286700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G134700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
3 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.008G006100 MATE efflux protein, putative, expressed -
5 Sobic.006G101500 expressed protein -
6 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
7 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
8 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
9 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
10 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
11 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
12 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
14 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
15 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
16 Sobic.010G035400 expressed protein -
17 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
18 Sobic.001G168800 BTBN7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
19 Sobic.004G012900 expressed protein -
20 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G134700 Sobic001G134700 Sobic004G336200 Sobic004G336200 Sobic001G134700--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic001G134700--Sobic005G100300 Sobic003G160800 Sobic003G160800 Sobic001G134700--Sobic003G160800 Sobic008G006100 Sobic008G006100 Sobic001G134700--Sobic008G006100 Sobic006G101500 Sobic006G101500 Sobic001G134700--Sobic006G101500 Sobic001G500600 Sobic001G500600 Sobic001G134700--Sobic001G500600 Sobic008G073100 Sobic008G073100 Sobic001G134700--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic001G134700--Sobic005G110400 Sobic003G387100 Sobic003G387100 Sobic001G134700--Sobic003G387100 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic002G405100 Sobic002G405100 Sobic005G100300--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic005G100300--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic005G100300--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic005G100300--Sobic003G094350 Sobic005G100300--Sobic003G160800 Sobic001G128600 Sobic001G128600 Sobic005G100300--Sobic001G128600 Sobic005G100300--Sobic002G401800 Sobic005G100300--Sobic001G134700 Sobic004G353100 Sobic004G353100 Sobic005G100300--Sobic004G353100 Sobic003G160800--Sobic004G336200 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic008G006100--Sobic002G112400 Sobic008G006100--Sobic001G128600 Sobic009G062400 Sobic009G062400 Sobic008G006100--Sobic009G062400 Sobic008G006100--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic008G006100--Sobic003G070900 Sobic009G237000 Sobic009G237000 Sobic008G006100--Sobic009G237000 Sobic008G006100--Sobic001G134700 Sobic008G006100--Sobic003G233700 Sobic008G006100--Sobic007G103400 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic004G211600 Sobic004G211600 Sobic006G101500--Sobic004G211600 Sobic006G101500--Sobic001G134700 Sobic003G431700 Sobic003G431700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic006G101500--Sobic008G006100 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic008G073100--Sobic005G110400 Sobic001G368500 Sobic001G368500 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.