Gene annotation
Transcriptome id Sobic.005G100300.1
Synonym Sb05g008630
Functional annotation OsClp12 - Putative Clp protease homologue, expressed
UniProt C5Y1Q5
Pfam PF02190
Panther DB PTHR10046 PTHR10046:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004176ATP-dependent peptidase activity GO:0005524ATP binding GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G35340 : ATP-dependent protease La (LON) domain protein
RAP-DB (Rice) LOC_Os11g11210.1 : OsClp12 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a029678
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
2 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.010G201600 tic21, putative, expressed -
4 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
5 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -
7 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
8 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
10 Sobic.010G035400 expressed protein -
11 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.007G103400 expressed protein -
13 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
14 Sobic.008G006100 MATE efflux protein, putative, expressed -
15 Sobic.003G233700 SET domain-containing protein, putative, expressed -
16 Sobic.007G225500 expressed protein -
17 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
18 Sobic.007G052400 rubredoxin family protein, putative, expressed -
19 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain


Gene co-expression network
sample Sobic005G100300 Sobic005G100300 Sobic002G405100 Sobic002G405100 Sobic005G100300--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic005G100300--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic005G100300--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic005G100300--Sobic003G094350 Sobic003G160800 Sobic003G160800 Sobic005G100300--Sobic003G160800 Sobic001G128600 Sobic001G128600 Sobic005G100300--Sobic001G128600 Sobic002G401800 Sobic002G401800 Sobic005G100300--Sobic002G401800 Sobic001G134700 Sobic001G134700 Sobic005G100300--Sobic001G134700 Sobic004G353100 Sobic004G353100 Sobic005G100300--Sobic004G353100 Sobic002G405100--Sobic002G133900 Sobic002G405100--Sobic005G100300 Sobic002G405100--Sobic002G401800 Sobic002G405100--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic002G405100--Sobic010G035400 Sobic002G405100--Sobic010G201600 Sobic002G405100--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic002G405100--Sobic004G336200 Sobic007G052400 Sobic007G052400 Sobic002G405100--Sobic007G052400 Sobic003G070900 Sobic003G070900 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic003G287900 Sobic003G287900 Sobic002G133900--Sobic003G287900 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic002G133900--Sobic002G028400 Sobic007G103400 Sobic007G103400 Sobic002G133900--Sobic007G103400 Sobic009G170200 Sobic009G170200 Sobic002G133900--Sobic009G170200 Sobic010G201600--Sobic005G100300 Sobic010G201600--Sobic002G405100 Sobic010G201600--Sobic001G128600 Sobic010G201600--Sobic002G133900 Sobic002G233700 Sobic002G233700 Sobic010G201600--Sobic002G233700 Sobic010G201600--Sobic002G401800 Sobic004G303200 Sobic004G303200 Sobic010G201600--Sobic004G303200 Sobic010G201600--Sobic007G052400 Sobic010G201600--Sobic003G094350 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic001G500600 Sobic001G500600 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic003G094350--Sobic004G353100 Sobic003G160800--Sobic004G336200 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic001G128600--Sobic002G112400 Sobic006G265900 Sobic006G265900 Sobic001G128600--Sobic006G265900 Sobic008G006100 Sobic008G006100 Sobic001G128600--Sobic008G006100 Sobic001G122300 Sobic001G122300 Sobic001G128600--Sobic001G122300 Sobic001G005200 Sobic001G005200 Sobic001G128600--Sobic001G005200 Sobic001G128600--Sobic005G100300 Sobic002G298800 Sobic002G298800 Sobic001G128600--Sobic002G298800 Sobic001G128600--Sobic009G175500 Sobic006G097500 Sobic006G097500 Sobic001G128600--Sobic006G097500 Sobic002G401800--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic002G401800--Sobic008G073100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G272100 Sobic002G272100 Sobic002G401800--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic002G401800--Sobic005G110400 Sobic002G401800--Sobic005G100300 Sobic001G368500 Sobic001G368500 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic001G134700--Sobic004G336200 Sobic001G134700--Sobic005G100300 Sobic001G134700--Sobic003G160800 Sobic001G134700--Sobic008G006100 Sobic006G101500 Sobic006G101500 Sobic001G134700--Sobic006G101500 Sobic001G134700--Sobic001G500600 Sobic001G134700--Sobic008G073100 Sobic001G134700--Sobic005G110400 Sobic001G134700--Sobic003G387100 Sobic004G353100--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic004G353100--Sobic009G237000 Sobic004G353100--Sobic002G133900 Sobic004G353100--Sobic002G298800 Sobic004G353100--Sobic010G035400 Sobic004G353100--Sobic003G070900 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200
Octagon: transcription factors


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