Gene annotation
Transcriptome id Sobic.002G043600.1
Synonym PRORS1, OVA6, Sb02g003730
Functional annotation prolyl-tRNA synthetase, putative, expressed
UniProt C5XAA3
Pfam PF03129 PF09180 PF00587
Panther DB PTHR11451 PTHR11451:SF6
NCBI CDD -
KEGG Orthology K01881; PARS, prolyl-tRNA synthetase
Gene Ontology GO:0006433; prolyl-tRNA aminoacylation GO:0005737cytoplasm GO:0005524ATP binding GO:0004827proline-tRNA ligase activity GO:0000166nucleotide binding GO:0006418tRNA aminoacylation for protein translation GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT5G52520 : Class II aaRS and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os07g07060.1 : prolyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a045086
Brachypodium KQK20760 , KQK20759
Barley HORVU2Hr1G057880.1 , HORVU2Hr1G057880.2 , HORVU2Hr1G057880.3
Wheat TraesCS2D02G248600 , TraesCS2D02G248600 , TraesCS2A02G246200 , TraesCS2B02G270500 , TraesCS2B02G270500
Populus PNS96855


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
2 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
3 Sobic.001G516901 - -
4 Sobic.003G352500 ribonuclease protein, putative, expressed -
5 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
6 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
7 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
8 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
9 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
10 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
11 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
12 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
13 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
14 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
15 Sobic.002G304100 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
16 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
18 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
19 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -


Gene co-expression network
sample Sobic002G043600 Sobic002G043600 Sobic003G232700 Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic001G500600 Sobic001G500600 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G141100 Sobic003G141100 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic001G516901--Sobic001G500600 Sobic001G516901--Sobic006G197300 Sobic004G336200 Sobic004G336200 Sobic001G516901--Sobic004G336200 Sobic001G516901--Sobic002G043600 Sobic009G024300 Sobic009G024300 Sobic001G516901--Sobic009G024300 Sobic010G035400 Sobic010G035400 Sobic001G516901--Sobic010G035400 Sobic001G516901--Sobic004G238200 Sobic002G258600 Sobic002G258600 Sobic001G516901--Sobic002G258600 Sobic003G160800 Sobic003G160800 Sobic001G516901--Sobic003G160800 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic003G352500--Sobic007G185700 Sobic003G352500--Sobic003G141100 Sobic003G352500--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic003G352500--Sobic006G270200 Sobic001G028100 Sobic001G028100 Sobic003G352500--Sobic001G028100 Sobic003G352500--Sobic001G500600 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic003G234900 Sobic003G234900 Sobic004G163800--Sobic003G234900 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic002G431300 Sobic002G431300 Sobic004G163800--Sobic002G431300 Sobic004G163800--Sobic004G238200 Sobic001G327800 Sobic001G327800 Sobic004G163800--Sobic001G327800 Sobic002G343400 Sobic002G343400 Sobic004G163800--Sobic002G343400 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic001G495200--Sobic004G011300 Sobic005G143500 Sobic005G143500 Sobic001G495200--Sobic005G143500 Sobic006G106400 Sobic006G106400 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic001G495200--Sobic002G043600 Sobic004G011300--Sobic006G106400 Sobic004G011300--Sobic009G148500 Sobic004G011300--Sobic001G495200 Sobic004G011300--Sobic004G336000 Sobic004G011300--Sobic002G181000 Sobic004G011300--Sobic002G043600 Sobic004G011300--Sobic008G039600 Sobic008G073100 Sobic008G073100 Sobic004G011300--Sobic008G073100 Sobic004G011300--Sobic003G301300 Sobic001G083100 Sobic001G083100 Sobic005G002900--Sobic001G083100 Sobic006G055800 Sobic006G055800 Sobic005G002900--Sobic006G055800 Sobic005G002900--Sobic009G148500 Sobic001G469933 Sobic001G469933 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic005G002900--Sobic003G232700 Sobic002G131700 Sobic002G131700 Sobic005G002900--Sobic002G131700 Sobic005G231100--Sobic001G500600 Sobic003G085100 Sobic003G085100 Sobic005G231100--Sobic003G085100 Sobic005G231100--Sobic009G148500 Sobic005G231100--Sobic001G516901 Sobic005G231100--Sobic003G232700 Sobic005G231100--Sobic004G238200 Sobic007G005400 Sobic007G005400 Sobic005G231100--Sobic007G005400 Sobic005G231100--Sobic002G043600 Sobic005G231100--Sobic003G234900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.