Gene annotation
Transcriptome id Sobic.003G067100.2,Sobic.003G067100.3
Synonym Sb03g005710
Functional annotation aspartyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q1Q5 , A0A1W0VW18
Pfam PF00152 PF02938 PF02938 PF00152
Panther DB PTHR22594:SF5 PTHR22594 PTHR22594 PTHR22594:SF5
NCBI CDD -
KEGG Orthology K01876; aspartyl-tRNA synthetase
Gene Ontology GO:0016874; ligase activity GO:0000166nucleotide binding GO:0004812aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006418tRNA aminoacylation for protein translation GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0016874ligase activity


Orthologs (automatic annotation)
TAIR AT4G33760 : tRNA synthetase class II (D, K and N) family protein
RAP-DB (Rice) LOC_Os01g06020.1 : aspartyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a023405
Brachypodium KQK13045
Barley HORVU3Hr1G015870.10 , HORVU3Hr1G015870.11 , HORVU3Hr1G015870.12 , HORVU3Hr1G015870.13 , HORVU3Hr1G015870.2 , HORVU3Hr1G015870.3 , HORVU3Hr1G015870.1 , HORVU3Hr1G015870.6 , HORVU3Hr1G015870.7 , HORVU3Hr1G015870.4 , HORVU3Hr1G015870.5 , HORVU3Hr1G015870.8 , HORVU3Hr1G015870.9
Wheat TraesCS3D02G089200 , TraesCS3D02G089200 , TraesCS3A02G089000 , TraesCS3B02G104400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
2 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
3 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
4 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
5 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
6 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
7 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
8 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
9 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
10 Sobic.004G359100 expressed protein -
11 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
12 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
13 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
14 Sobic.010G176550 - -
15 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
16 Sobic.003G369400 expressed protein -
17 Sobic.002G127550 - -
18 Sobic.006G088000 translocon Tic40, putative, expressed -
19 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
20 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein


Gene co-expression network
sample Sobic003G067100 Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic005G014700--Sobic003G067100 Sobic005G014700--Sobic001G102500 Sobic005G014700--Sobic002G043600 Sobic001G327800 Sobic001G327800 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic005G014700--Sobic004G238900 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic001G032700 Sobic001G032700 Sobic005G014700--Sobic001G032700 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic001G102500--Sobic003G067100 Sobic001G102500--Sobic005G014700 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic001G102500--Sobic004G238900 Sobic004G238900--Sobic003G067100 Sobic004G238900--Sobic005G014700 Sobic004G359100 Sobic004G359100 Sobic004G238900--Sobic004G359100 Sobic004G238900--Sobic001G102500 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic007G023200 Sobic007G023200 Sobic004G238900--Sobic007G023200 Sobic004G238900--Sobic010G255100 Sobic004G238900--Sobic004G163800 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic004G236400 Sobic004G236400 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G434700--Sobic003G234900 Sobic003G232700 Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic002G043600--Sobic005G231100 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic004G163800--Sobic002G431300 Sobic004G238200 Sobic004G238200 Sobic004G163800--Sobic004G238200 Sobic004G163800--Sobic001G327800 Sobic004G163800--Sobic002G343400
Octagon: transcription factors


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