Gene annotation
Transcriptome id Sobic.006G058100.1
Synonym Sb06g014590, CLPC1, DCA1, CLPC, ATHSP93-V, HSP93-V
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
UniProt C5YF84
Pfam PF02151 PF07728 PF10431 PF00004 PF02861
Panther DB PTHR11638 PTHR11638:SF96
NCBI CDD -
KEGG Orthology K03696; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology GO:0005515; protein binding GO:0016887ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G50920 : CLPC homologue 1
RAP-DB (Rice) LOC_Os04g32560.2 : ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a055939 , Zm00025a011670
Brachypodium KQJ99624 , KQJ99625 , PNT68694
Barley HORVU2Hr1G071080.8 , HORVU2Hr1G071080.9 , HORVU2Hr1G071080.4 , HORVU2Hr1G071080.5 , HORVU2Hr1G071080.6 , HORVU2Hr1G071080.7 , HORVU2Hr1G071080.1 , HORVU2Hr1G071080.2 , HORVU2Hr1G071080.3 , HORVU2Hr1G071080.18 , HORVU2Hr1G071080.16 , HORVU2Hr1G071080.17 , HORVU2Hr1G071080.14 , HORVU2Hr1G071080.15 , HORVU2Hr1G071080.12 , HORVU2Hr1G071080.13 , HORVU2Hr1G071080.10 , HORVU2Hr1G071080.11
Wheat TraesCS6B02G233800 , TraesCS2A02G287300 , TraesCS2A02G287300 , TraesCS2D02G285800 , TraesCS6D02G183600 , TraesCS6D02G183600 , TraesCS2B02G304200 , TraesCS6A02G195200
Populus PNT10513 , PNT10514


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
2 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
5 Sobic.004G236400 AAA family ATPase, putative, expressed -
6 Sobic.001G261573 - -
7 Sobic.010G176550 - -
8 Sobic.004G225600 - -
9 Sobic.009G094900 sugar porter, putative, expressed -
10 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
11 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K
14 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
15 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
16 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
17 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
18 Sobic.008G150700 protein kinase domain containing protein, expressed -
19 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
20 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme


Gene co-expression network
sample Sobic006G058100 Sobic006G058100 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic003G067100 Sobic003G067100 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic004G236400 Sobic004G236400 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic002G143500--Sobic001G166600 Sobic006G216800 Sobic006G216800 Sobic002G143500--Sobic006G216800 Sobic001G219600 Sobic001G219600 Sobic002G143500--Sobic001G219600 Sobic002G143500--Sobic006G058100 Sobic001G071400 Sobic001G071400 Sobic002G143500--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic002G143500--Sobic007G116200 Sobic003G141500 Sobic003G141500 Sobic002G143500--Sobic003G141500 Sobic003G280800 Sobic003G280800 Sobic002G143500--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic002G143500--Sobic009G126400 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic009G127400 Sobic009G127400 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic007G207200 Sobic007G207200 Sobic001G166600--Sobic007G207200 Sobic001G166600--Sobic002G143500 Sobic001G166600--Sobic006G058100 Sobic009G084900 Sobic009G084900 Sobic001G166600--Sobic009G084900 Sobic001G166600--Sobic004G236400 Sobic009G245800 Sobic009G245800 Sobic001G166600--Sobic009G245800 Sobic001G166600--Sobic001G219600 Sobic001G166600--Sobic003G141500 Sobic002G359400 Sobic002G359400 Sobic001G166600--Sobic002G359400 Sobic004G236400--Sobic006G058100 Sobic004G236400--Sobic001G166600 Sobic007G225000 Sobic007G225000 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic001G261573--Sobic006G058100 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic002G031400 Sobic002G031400 Sobic010G176550--Sobic002G031400 Sobic004G034800 Sobic004G034800 Sobic010G176550--Sobic004G034800 Sobic010G176550--Sobic001G261573 Sobic003G217700 Sobic003G217700 Sobic010G176550--Sobic003G217700 Sobic010G176550--Sobic007G185700 Sobic001G035900 Sobic001G035900 Sobic010G176550--Sobic001G035900 Sobic010G176550--Sobic003G234900 Sobic010G005600 Sobic010G005600 Sobic010G176550--Sobic010G005600 Sobic010G032900 Sobic010G032900 Sobic010G176550--Sobic010G032900 Sobic004G225600--Sobic001G022500 Sobic004G208600 Sobic004G208600 Sobic004G225600--Sobic004G208600 Sobic004G225600--Sobic003G162800 Sobic001G099000 Sobic001G099000 Sobic004G225600--Sobic001G099000 Sobic007G095500 Sobic007G095500 Sobic004G225600--Sobic007G095500 Sobic004G225600--Sobic006G058100 Sobic001G375000 Sobic001G375000 Sobic004G225600--Sobic001G375000 Sobic004G225600--Sobic003G434700 Sobic005G184300 Sobic005G184300 Sobic004G225600--Sobic005G184300 Sobic001G016600 Sobic001G016600 Sobic009G094900--Sobic001G016600 Sobic007G105100 Sobic007G105100 Sobic009G094900--Sobic007G105100 Sobic009G094900--Sobic006G058100 Sobic009G094900--Sobic002G143500 Sobic004G208900 Sobic004G208900 Sobic009G094900--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G094900--Sobic005G112300 Sobic009G027300 Sobic009G027300 Sobic009G094900--Sobic009G027300 Sobic001G289600 Sobic001G289600 Sobic009G094900--Sobic001G289600 Sobic008G150700 Sobic008G150700 Sobic009G094900--Sobic008G150700
Octagon: transcription factors


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