Gene annotation
Transcriptome id Sobic.003G234900.2,Sobic.003G234900.1,Sobic.003G234900.3,Sobic.003G234900.5,Sobic.003G234900.4,Sobic.003G234900.6
Synonym Sb03g029230
Functional annotation radical SAM enzyme, putative, expressed
UniProt C5XEK5 , A0A1W0VYL4 , A0A1B6Q4Y6
Pfam PF13394 PF04055
Panther DB PTHR30544 PTHR30544:SF3
NCBI CDD -
KEGG Orthology K06941; 23S rRNA (adenine2503-C2)-methyltransferase
Gene Ontology GO:0003824; catalytic activity GO:0008173RNA methyltransferase activity GO:0006364rRNA processing GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT1G60230 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os01g45370.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a038670
Brachypodium KQK08926 , KQK08924 , KQK08925
Barley HORVU3Hr1G057020.3 , HORVU3Hr1G057020.2 , HORVU3Hr1G057020.1 , HORVU3Hr1G057020.7 , HORVU3Hr1G057020.6 , HORVU3Hr1G057020.5 , HORVU3Hr1G057020.4 , HORVU3Hr1G057020.9 , HORVU3Hr1G057020.8 , HORVU3Hr1G057020.13 , HORVU3Hr1G057020.12 , HORVU3Hr1G057020.11 , HORVU3Hr1G057020.10 , HORVU3Hr1G057020.16 , HORVU3Hr1G057020.15 , HORVU3Hr1G057020.14 , HORVU3Hr1G057020.19
Wheat TraesCS3B02G259700 , TraesCS3B02G259700 , TraesCS3A02G230400 , TraesCS3A02G230400 , TraesCS3D02G222900 , TraesCS3D02G222900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
2 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
3 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
4 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
5 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
6 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
7 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
8 Sobic.002G343400 tic20, putative, expressed -
9 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
10 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
11 Sobic.010G176550 - -
12 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
13 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
14 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
15 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
16 Sobic.003G217700 - -
17 Sobic.001G261573 - -
18 Sobic.003G352500 ribonuclease protein, putative, expressed -
19 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic003G234900 Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G067100 Sobic003G067100 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic002G043600 Sobic002G043600 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic004G120100 Sobic004G120100 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic003G232700 Sobic003G232700 Sobic004G163800--Sobic003G232700 Sobic005G084500 Sobic005G084500 Sobic004G163800--Sobic005G084500 Sobic004G163800--Sobic002G431300 Sobic004G238200 Sobic004G238200 Sobic004G163800--Sobic004G238200 Sobic001G327800 Sobic001G327800 Sobic004G163800--Sobic001G327800 Sobic004G163800--Sobic002G343400 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic007G185700--Sobic005G231100 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic003G067100--Sobic004G163800 Sobic005G231100--Sobic001G500600 Sobic003G085100 Sobic003G085100 Sobic005G231100--Sobic003G085100 Sobic009G148500 Sobic009G148500 Sobic005G231100--Sobic009G148500 Sobic001G516901 Sobic001G516901 Sobic005G231100--Sobic001G516901 Sobic005G231100--Sobic003G232700 Sobic005G231100--Sobic004G238200 Sobic007G005400 Sobic007G005400 Sobic005G231100--Sobic007G005400 Sobic005G231100--Sobic002G043600 Sobic005G231100--Sobic003G234900 Sobic004G359100 Sobic004G359100 Sobic002G431300--Sobic004G359100 Sobic002G431300--Sobic003G234900 Sobic002G431300--Sobic004G163800 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic006G186600 Sobic006G186600 Sobic002G431300--Sobic006G186600 Sobic002G431300--Sobic006G038500 Sobic002G431300--Sobic002G343400 Sobic002G431300--Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic002G043600--Sobic005G231100 Sobic003G141100--Sobic001G500600 Sobic004G328400 Sobic004G328400 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic002G343400--Sobic004G359100 Sobic002G343400--Sobic004G163800 Sobic002G343400--Sobic003G234900 Sobic001G382800 Sobic001G382800 Sobic002G343400--Sobic001G382800 Sobic001G401700 Sobic001G401700 Sobic002G343400--Sobic001G401700 Sobic002G343400--Sobic001G327800 Sobic002G343400--Sobic002G431300 Sobic002G343400--Sobic004G238900 Sobic002G343400--Sobic003G067100 Sobic002G347600 Sobic002G347600 Sobic006G038500--Sobic002G347600 Sobic001G465700 Sobic001G465700 Sobic006G038500--Sobic001G465700 Sobic006G038500--Sobic004G120100 Sobic001G126300 Sobic001G126300 Sobic006G038500--Sobic001G126300 Sobic006G038500--Sobic003G141100 Sobic006G038500--Sobic006G128300 Sobic006G038500--Sobic001G516901 Sobic006G038500--Sobic003G232700 Sobic006G038500--Sobic003G160800
Octagon: transcription factors


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