Gene annotation
Transcriptome id Sobic.003G352500.2,Sobic.003G352500.1
Synonym ATMTRNASEII, EMB2730, Sb03g039500, RNR1
Functional annotation ribonuclease protein, putative, expressed
UniProt A0A1W0W0C8
Pfam PF00773
Panther DB PTHR23355:SF5 PTHR23355
NCBI CDD KOG2102; Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02250 : Ribonuclease II/R family protein
RAP-DB (Rice) LOC_Os01g62440.1 : ribonuclease protein, putative, expressed
MaizeGDB (Corn) Zm00025a026899
Brachypodium KQK07808 , KQK07809 , KQK07810
Barley HORVU1Hr1G010820.14 , HORVU1Hr1G010820.15 , HORVU1Hr1G010820.12 , HORVU1Hr1G010820.13 , HORVU1Hr1G010820.10 , HORVU1Hr1G010820.11 , HORVU1Hr1G010820.4 , HORVU1Hr1G010820.5 , HORVU1Hr1G010820.6 , HORVU1Hr1G010820.1 , HORVU1Hr1G010820.2 , HORVU1Hr1G010820.3 , HORVU1Hr1G010820.8 , HORVU1Hr1G010820.9 , HORVU1Hr1G010820.7
Wheat TraesCS1D02G056100 , TraesCS1A02G055400 , TraesCS1A02G055400 , TraesCS1B02G072200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G352500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
2 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
3 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
4 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
7 Sobic.006G270200 smr domain containing protein, expressed K07456: DNA mismatch repair protein MutS2
8 Sobic.001G028100 - -
9 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
10 Sobic.010G136200 oxidoreductase/ transition metal ion binding protein, putative, expressed -
11 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
12 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
13 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G197300 expressed protein -
15 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
16 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
17 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
18 Sobic.002G304100 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
19 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic003G352500 Sobic003G352500 Sobic003G232700 Sobic003G232700 Sobic003G352500--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic003G352500--Sobic002G043600 Sobic002G181000 Sobic002G181000 Sobic003G352500--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic003G352500--Sobic007G185700 Sobic003G141100 Sobic003G141100 Sobic003G352500--Sobic003G141100 Sobic001G054100 Sobic001G054100 Sobic003G352500--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic003G352500--Sobic006G270200 Sobic001G028100 Sobic001G028100 Sobic003G352500--Sobic001G028100 Sobic001G500600 Sobic001G500600 Sobic003G352500--Sobic001G500600 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic007G185700--Sobic005G231100 Sobic003G141100--Sobic001G500600 Sobic004G328400 Sobic004G328400 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic001G054100--Sobic004G328400 Sobic006G270200--Sobic001G028100 Sobic006G270200--Sobic003G352500 Sobic006G270200--Sobic001G054100 Sobic006G270200--Sobic008G039600 Sobic006G270200--Sobic002G181000 Sobic006G270200--Sobic010G002000 Sobic001G220000 Sobic001G220000 Sobic006G270200--Sobic001G220000 Sobic003G094350 Sobic003G094350 Sobic006G270200--Sobic003G094350 Sobic006G270200--Sobic003G232700 Sobic001G028100--Sobic001G054100 Sobic001G028100--Sobic006G270200 Sobic001G028100--Sobic003G352500 Sobic001G028100--Sobic002G181000 Sobic001G028100--Sobic007G185700 Sobic001G028100--Sobic010G002000 Sobic001G028100--Sobic008G039600 Sobic001G028100--Sobic003G232700 Sobic001G028100--Sobic002G043600 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.