Gene annotation
Transcriptome id Sobic.001G054100.1
Synonym EMB269, Sb01g004960, CPSAR1, ATOBGC
Functional annotation spo0B-associated GTP-binding protein, putative, expressed
UniProt C5WX42
Pfam PF01018 PF01926
Panther DB PTHR11702 PTHR11702:SF3
NCBI CDD KOG1489; Predicted GTP-binding protein (ODN superfamily)
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding GO:0003924GTPase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G18570 : GTP1/OBG family protein
RAP-DB (Rice) LOC_Os03g58540.1 : spo0B-associated GTP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a008594
Brachypodium KQK12667
Barley HORVU5Hr1G106790.6 , HORVU5Hr1G106790.4 , HORVU5Hr1G106790.5 , HORVU5Hr1G106790.2 , HORVU5Hr1G106790.3 , HORVU5Hr1G106790.1 , HORVU5Hr1G106790.8 , HORVU5Hr1G106790.9 , HORVU5Hr1G106790.7 , HORVU3Hr1G052780.6 , HORVU3Hr1G052780.14 , HORVU3Hr1G052780.17 , HORVU3Hr1G052780.16 , HORVU3Hr1G052780.4 , HORVU5Hr1G106790.10 , HORVU5Hr1G106790.11
Wheat TraesCS5D02G453300 , TraesCS5B02G450400 , TraesCS5A02G445100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028100 - -
2 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
3 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
4 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
7 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
8 Sobic.001G037500 expressed protein -
9 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
10 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
11 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
12 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
13 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
14 Sobic.003G352500 ribonuclease protein, putative, expressed -
15 Sobic.004G333400 COBW domain containing protein, putative, expressed -
16 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
18 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
19 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family


Gene co-expression network
sample Sobic001G054100 Sobic001G054100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic001G028100--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic001G028100--Sobic006G270200 Sobic003G352500 Sobic003G352500 Sobic001G028100--Sobic003G352500 Sobic001G028100--Sobic002G181000 Sobic001G028100--Sobic007G185700 Sobic001G028100--Sobic010G002000 Sobic008G039600 Sobic008G039600 Sobic001G028100--Sobic008G039600 Sobic003G232700 Sobic003G232700 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600 Sobic001G500600 Sobic001G500600 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G094350 Sobic003G094350 Sobic003G372900--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic005G002900 Sobic005G002900 Sobic001G083100--Sobic005G002900 Sobic009G148500 Sobic009G148500 Sobic001G083100--Sobic009G148500 Sobic001G083100--Sobic008G039600 Sobic001G469933 Sobic001G469933 Sobic001G083100--Sobic001G469933 Sobic006G055800 Sobic006G055800 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic001G083100--Sobic003G372900 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic002G181000--Sobic001G054100 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic010G002000--Sobic003G094350 Sobic010G002000--Sobic008G039600 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic004G328400--Sobic003G141100 Sobic004G328400--Sobic003G232700 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G328400--Sobic004G336200 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800
Octagon: transcription factors


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