Gene annotation
Transcriptome id Sobic.003G084500.3,Sobic.003G084500.5,Sobic.003G084500.2,Sobic.003G084500.4,Sobic.003G084500.1
Synonym Sb03g007130
Functional annotation peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
UniProt A0A1W0VW86 , C5XQU4
Pfam PF01195
Panther DB PTHR17224:SF3 PTHR17224 PTHR17224 PTHR17224:SF3
NCBI CDD KOG2255; Peptidyl-tRNA hydrolase
KEGG Orthology K01056; PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G38290 : Peptidyl-tRNA hydrolase family protein
RAP-DB (Rice) LOC_Os03g22610.2 : peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a035566
Brachypodium KQK02548
Barley HORVU3Hr1G007040.4 , HORVU3Hr1G007040.2 , HORVU3Hr1G007040.10 , HORVU3Hr1G007040.11 , HORVU3Hr1G007040.5 , HORVU3Hr1G007040.6 , HORVU3Hr1G007040.7 , HORVU3Hr1G007040.1 , HORVU3Hr1G007040.3 , HORVU3Hr1G007040.8 , HORVU3Hr1G007040.9
Wheat TraesCS3A02G036100 , TraesCS3B02G047900 , TraesCS3D02G043900
Populus -


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cDNA sequences
Sobic.003G084500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G333400 COBW domain containing protein, putative, expressed -
2 Sobic.003G334100 zinc finger family protein, putative, expressed -
3 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
4 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
5 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
6 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
7 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
8 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
10 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
12 Sobic.004G179200 expressed protein -
13 Sobic.003G039300 expressed protein -
14 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
15 Sobic.001G277400 expressed protein -
16 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
17 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
18 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.010G109600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@angel, putative, expressed -
20 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -


Gene co-expression network
sample Sobic003G084500 Sobic003G084500 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G334100--Sobic003G084500 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic003G334100--Sobic009G234200 Sobic006G214700 Sobic006G214700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic003G330100 Sobic003G330100 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic006G204100 Sobic006G204100 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic003G286300--Sobic001G450600 Sobic003G286300--Sobic003G084500 Sobic003G286300--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G286300--Sobic003G221700 Sobic003G286300--Sobic003G444500 Sobic003G286300--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic003G286300--Sobic002G297400 Sobic003G439600 Sobic003G439600 Sobic003G286300--Sobic003G439600 Sobic003G286300--Sobic003G330100 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic003G444500--Sobic004G250200 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic005G028900 Sobic005G028900 Sobic010G183400--Sobic005G028900 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic005G002900 Sobic005G002900 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic003G141100 Sobic003G141100 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400
Octagon: transcription factors


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