Gene annotation
Transcriptome id Sobic.003G286300.2,Sobic.003G286300.1
Synonym Sb03g033710
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt C5XJ31
Pfam PF01926
Panther DB PTHR11649 PTHR11649:SF49
NCBI CDD KOG2486; Predicted GTPase
KEGG Orthology K03978; GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G11480 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g53150.2,LOC_Os01g53150.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027702
Brachypodium KQK09594
Barley HORVU3Hr1G069520.3 , HORVU3Hr1G069520.2 , HORVU3Hr1G069520.1 , HORVU3Hr1G069520.4
Wheat TraesCS3D02G281100 , TraesCS4B02G236100 , TraesCS3B02G314900 , TraesCS4D02G237500 , TraesCS3A02G281200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
2 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
3 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
4 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
5 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
6 Sobic.004G179200 expressed protein -
7 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
9 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
10 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
11 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
12 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
14 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
15 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
16 Sobic.006G256600 expressed protein -
17 Sobic.004G333400 COBW domain containing protein, putative, expressed -
18 Sobic.001G388400 expressed protein -
19 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
20 Sobic.002G331800 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic003G286300 Sobic003G286300 Sobic001G450600 Sobic001G450600 Sobic003G286300--Sobic001G450600 Sobic003G084500 Sobic003G084500 Sobic003G286300--Sobic003G084500 Sobic009G234200 Sobic009G234200 Sobic003G286300--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G286300--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic003G286300--Sobic003G444500 Sobic004G179200 Sobic004G179200 Sobic003G286300--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic003G286300--Sobic002G297400 Sobic003G439600 Sobic003G439600 Sobic003G286300--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic003G286300--Sobic003G330100 Sobic006G214700 Sobic006G214700 Sobic001G450600--Sobic006G214700 Sobic004G333400 Sobic004G333400 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic010G183400 Sobic010G183400 Sobic001G450600--Sobic010G183400 Sobic001G450600--Sobic003G084500 Sobic002G331800 Sobic002G331800 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic003G084500--Sobic004G333400 Sobic003G084500--Sobic003G334100 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G084500--Sobic003G286300 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic006G204100 Sobic006G204100 Sobic009G234200--Sobic006G204100 Sobic003G245800 Sobic003G245800 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic009G234200--Sobic004G179200 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic008G072300 Sobic008G072300 Sobic003G221700--Sobic008G072300 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic003G444500--Sobic002G131700 Sobic003G444500--Sobic004G250200 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic002G297400--Sobic004G179200 Sobic006G055800 Sobic006G055800 Sobic002G297400--Sobic006G055800 Sobic002G297400--Sobic001G469933 Sobic006G256600 Sobic006G256600 Sobic002G297400--Sobic006G256600 Sobic001G122400 Sobic001G122400 Sobic002G297400--Sobic001G122400 Sobic005G184300 Sobic005G184300 Sobic002G297400--Sobic005G184300 Sobic003G324700 Sobic003G324700 Sobic002G297400--Sobic003G324700 Sobic002G297400--Sobic003G439000 Sobic006G107600 Sobic006G107600 Sobic002G297400--Sobic006G107600 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G439600--Sobic003G286300 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200
Octagon: transcription factors


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