Gene annotation
Transcriptome id Sobic.003G330100.1
Synonym Sb03g037610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chloroplast ribonuclease III domain protein, putative, expressed
UniProt C5XN39
Pfam -
Panther DB PTHR11207 PTHR11207:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37510 : Ribonuclease III family protein
RAP-DB (Rice) LOC_Os01g59510.1 : chloroplast ribonuclease III domain protein, putative, expressed
MaizeGDB (Corn) Zm00025a027147
Brachypodium KQK10246 , KQK10194
Barley HORVU3Hr1G079260.4 , HORVU3Hr1G079260.1 , HORVU3Hr1G079260.3 , HORVU3Hr1G079260.2
Wheat TraesCS3D02G328100 , TraesCS3A02G334800 , TraesCS3B02G365700
Populus -


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cDNA sequences
Sobic.003G330100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
2 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
3 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
4 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
5 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
6 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
9 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
11 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
12 Sobic.004G179200 expressed protein -
13 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
14 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
15 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G251400 expressed protein -
17 Sobic.010G074200 - -
18 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
19 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
20 Sobic.009G028400 expressed protein -


Gene co-expression network
sample Sobic003G330100 Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G330100--Sobic004G250200 Sobic009G234200 Sobic009G234200 Sobic003G330100--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic004G179200 Sobic004G179200 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic006G111600--Sobic004G250200 Sobic006G111600--Sobic010G183400 Sobic006G197700 Sobic006G197700 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic007G171800 Sobic007G171800 Sobic002G131700--Sobic007G171800 Sobic005G002900 Sobic005G002900 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic003G245800 Sobic003G245800 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic004G250200--Sobic006G111600 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic001G388400 Sobic001G388400 Sobic009G234200--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic009G234200--Sobic006G111600 Sobic009G234200--Sobic004G179200 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic008G072300--Sobic006G204100 Sobic008G072300--Sobic003G330100 Sobic008G072300--Sobic003G221700 Sobic008G072300--Sobic009G234200 Sobic008G072300--Sobic006G111600 Sobic008G072300--Sobic002G345200 Sobic007G034500 Sobic007G034500 Sobic008G072300--Sobic007G034500 Sobic010G074200 Sobic010G074200 Sobic008G072300--Sobic010G074200 Sobic008G072300--Sobic004G250200 Sobic006G204100--Sobic010G074200 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic006G204100--Sobic003G330100 Sobic009G233800 Sobic009G233800 Sobic006G204100--Sobic009G233800 Sobic006G204100--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic006G204100--Sobic007G227600 Sobic006G204100--Sobic004G250200 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic001G450600 Sobic001G450600 Sobic010G183400--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic002G345200--Sobic003G245800 Sobic002G345200--Sobic006G197700 Sobic002G345200--Sobic003G330100 Sobic002G345200--Sobic004G250200 Sobic002G345200--Sobic003G221700 Sobic002G345200--Sobic008G072300 Sobic002G345200--Sobic006G111600 Sobic002G250100 Sobic002G250100 Sobic002G345200--Sobic002G250100 Sobic002G345200--Sobic010G028000
Octagon: transcription factors


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