Gene annotation
Transcriptome id Sobic.003G444500.2,Sobic.003G444500.1
Synonym Sb03g047400
Functional annotation radical SAM enzyme, putative, expressed
UniProt A0A1W0W1P9 , A0A1W0W1N2
Pfam PF04055
Panther DB PTHR30544 PTHR30544:SF6
NCBI CDD -
KEGG Orthology K06941; 23S rRNA (adenine2503-C2)-methyltransferase
Gene Ontology GO:0003824; catalytic activity GO:0008173RNA methyltransferase activity GO:0006364rRNA processing GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT2G39670 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os01g74190.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a031138 , Zm00025a025729 , Zm00025a039042
Brachypodium KQK11776
Barley -
Wheat TraesCS3A02G530100 , TraesCS3B02G600200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G444500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
2 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
3 Sobic.004G179200 expressed protein -
4 Sobic.002G251400 expressed protein -
5 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
6 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
7 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
8 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
9 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
10 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
12 Sobic.005G110481 - -
13 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
14 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
15 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
18 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
19 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
20 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A


Gene co-expression network
sample Sobic003G444500 Sobic003G444500 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G330100 Sobic003G330100 Sobic003G444500--Sobic003G330100 Sobic004G179200 Sobic004G179200 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G221700 Sobic003G221700 Sobic003G444500--Sobic003G221700 Sobic003G084500 Sobic003G084500 Sobic003G444500--Sobic003G084500 Sobic002G131700 Sobic002G131700 Sobic003G444500--Sobic002G131700 Sobic004G250200 Sobic004G250200 Sobic003G444500--Sobic004G250200 Sobic005G110481 Sobic005G110481 Sobic001G148200--Sobic005G110481 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic007G171800 Sobic007G171800 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic010G011200 Sobic010G011200 Sobic001G148200--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic001G148200--Sobic002G013700 Sobic007G034500 Sobic007G034500 Sobic001G148200--Sobic007G034500 Sobic009G001500 Sobic009G001500 Sobic001G148200--Sobic009G001500 Sobic006G111600 Sobic006G111600 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic009G234200 Sobic009G234200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic010G183400 Sobic010G183400 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic004G179200--Sobic002G131700 Sobic004G179200--Sobic003G221700 Sobic002G297400 Sobic002G297400 Sobic004G179200--Sobic002G297400 Sobic001G469933 Sobic001G469933 Sobic004G179200--Sobic001G469933 Sobic003G439000 Sobic003G439000 Sobic004G179200--Sobic003G439000 Sobic004G179200--Sobic006G111600 Sobic004G179200--Sobic009G234200 Sobic005G002900 Sobic005G002900 Sobic004G179200--Sobic005G002900 Sobic004G179200--Sobic003G330100 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic001G391400 Sobic001G391400 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic009G042200--Sobic004G335800 Sobic009G042200--Sobic003G444500 Sobic009G042200--Sobic002G297400 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G084500--Sobic003G444500 Sobic003G084500--Sobic010G183400 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic002G131700--Sobic004G179200 Sobic002G131700--Sobic003G330100 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic002G131700--Sobic005G002900 Sobic010G035200 Sobic010G035200 Sobic002G131700--Sobic010G035200 Sobic002G131700--Sobic003G221700 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic004G250200--Sobic006G111600 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic004G250200--Sobic003G221700 Sobic004G250200--Sobic003G444500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.